Table 1.
a) IDP175 | b) IDP175t | ||||||
r | δ | ζ | r | δ | ζ | ||
H | 0.9270 | 0.0801 | 2.6633 | H | 0.9214 | 0.0831 | 2.5668 |
E | 0.8543 | 0.0886 | 1.9186 | E | 0.8422 | 0.0920 | 1.8476 |
T | 0.5342 | 0.0613 | 1.1365 | T | 0.5411 | 0.0599 | 1.1631 |
D | 0.9322 | 0.0649 | 2.6987 | D | 0.9364 | 0.0617 | 2.8400 |
c) SP175 | d) SP175t | ||||||
r | δ | ζ | r | δ | ζ | ||
H | 0.9299 | 0.0771 | 2.7191 | H | 0.9233 | 0.0807 | 2.5977 |
E | 0.8398 | 0.0871 | 1.8354 | E | 0.8018 | 0.0956 | 1.6715 |
T | 0.3691 | 0.0543 | 1.0353 | T | 0.3915 | 0.0535 | 1.0510 |
D | 0.5945 | 0.0535 | 1.3051 | D | 0.7282 | 0.0484 | 1.4414 |
e) CDPro42 | f) | SP175+17 (from BeStSel12) | |||||
r | δ | ζ | r | δ | ζ | ||
H | 0.9175 | 0.0870 | 2.5001 | H | 0.9087 | 0.0897 | 2.3924 |
E | 0.6980 | 0.1145 | 1.3710 | E | 0.8016 | 0.1042 | 1.6712 |
T | 0.5296 | 0.0771 | 1.0873 | T | 0.4454 | 0.0531 | 1.0967 |
D | 0.7385 | 0.1550 | 1.3511 | D | 0.6623 | 0.054 | 1.3077 |
The following reference datasets were used: a) IDP175; b) IDP175t (low wavelength cut off 190 nm); c) SP1758, d) SP175t (low wavelength cut off 190 nm); e) CDPro4210 and f) SP175+17. The statistical parameters reported are: r, the Pearson’s correlation coefficient; δ, the root mean squared deviation, and ζ the ratio of δ over the population standard deviation as defined in the main text. The cross-validation values for all of the reference datasets/assignment methods are similar for helix and sheet secondary structures, but the disordered structure contents are very much improved using the IDP175 and IDP175t reference datasets. H,E,T, and D refer to the helical, sheet, turn, and disordered components, respectively.