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. 2023 Aug 8;6:823. doi: 10.1038/s42003-023-05178-2

Table 1.

Comparison of the leave-one-out cross-validations using the DichroIDP method with the dictionary of secondary structure of proteins (DSSP)23 assignment method.

a) IDP175 b) IDP175t
r δ ζ r δ ζ
H 0.9270 0.0801 2.6633 H 0.9214 0.0831 2.5668
E 0.8543 0.0886 1.9186 E 0.8422 0.0920 1.8476
T 0.5342 0.0613 1.1365 T 0.5411 0.0599 1.1631
D 0.9322 0.0649 2.6987 D 0.9364 0.0617 2.8400
c) SP175 d) SP175t
r δ ζ r δ ζ
H 0.9299 0.0771 2.7191 H 0.9233 0.0807 2.5977
E 0.8398 0.0871 1.8354 E 0.8018 0.0956 1.6715
T 0.3691 0.0543 1.0353 T 0.3915 0.0535 1.0510
D 0.5945 0.0535 1.3051 D 0.7282 0.0484 1.4414
e) CDPro42 f) SP175+17 (from BeStSel12)
r δ ζ r δ ζ
H 0.9175 0.0870 2.5001 H 0.9087 0.0897 2.3924
E 0.6980 0.1145 1.3710 E 0.8016 0.1042 1.6712
T 0.5296 0.0771 1.0873 T 0.4454 0.0531 1.0967
D 0.7385 0.1550 1.3511 D 0.6623 0.054 1.3077

The following reference datasets were used: a) IDP175; b) IDP175t (low wavelength cut off 190 nm); c) SP1758, d) SP175t (low wavelength cut off 190 nm); e) CDPro4210 and f) SP175+17. The statistical parameters reported are: r, the Pearson’s correlation coefficient; δ, the root mean squared deviation, and ζ the ratio of δ over the population standard deviation as defined in the main text. The cross-validation values for all of the reference datasets/assignment methods are similar for helix and sheet secondary structures, but the disordered structure contents are very much improved using the IDP175 and IDP175t reference datasets. H,E,T, and D refer to the helical, sheet, turn, and disordered components, respectively.