Table 4.
Gene | Haplotype | (All) total | Total Sumba | Sumba | Total Papua | Papua | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Year 2010 | 2011 | 2012 | 2015 | 2016 | 2017 | 2018 | Year 2020 | 2021 | |||||||||||||||||
Number | %a | Number | %a | Number | %a | Number | %a | Number | %a | Number | %a | Number | %a | Number | %a | Number | %a | Number | %a | Number | %a | Number | %a | ||
PfK13 Total n = 101 |
L396F | 1 | 1 | 1 | 20 | 0 | 0 | 0 | 0 | 1 | 20 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
I526V | 1 | 1 | 1 | 16.7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 16.7 | 0 | 0 | 0 | 0 | 0 | 0 | |
N537S | 1 | 1 | 1 | 20 | 0 | 0 | 0 | 0 | 1 | 20 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
M579I | 1 | 1 | 1 | 20 | 0 | 0 | 0 | 0 | 1 | 20 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
WT | 97 | 96 | 46 | 92 | 20 | 100 | 5 | 100 | 2 | 40 | 5 | 100 | 4 | 100 | 5 | 100 | 6 | 100 | 51 | 100 | 27 | 100 | 24 | 100 | |
pfcrt Total n: 31 |
I356L | 22 | 71 | 18 | 95 | 3 | 15 | 3 | 60 | 4 | 80 | 3 | 60 | 2 | 50 | 3 | 60 | 0 | 0 | 4 | 33.3 | 2 | 50 | 2 | 25 |
WT | 9 | 29 | 1 | 5.3 | 17 | 85 | 2 | 40 | 1 | 20 | 2 | 40 | 2 | 50 | 2 | 40 | 0 | 0 | 8 | 66.7 | 2 | 50 | 6 | 75 | |
pfmdr1 Total n = 93 Positions 1034, 1042, 1246 |
SDD | 19 | 20.4 | 15 | 31.3 | 3 | 15.8 | 4 | 80 | 2 | 40 | 3 | 75 | 1 | 33.3 | 2 | 40 | 0 | 0 | 4 | 8.9 | 3 | 10.3 | 1 | 6.3 |
SND | 74 | 79.6 | 33 | 68.8 | 16 | 84.2 | 1 | 20 | 3 | 60 | 1 | 25 | 2 | 66.7 | 3 | 60 | 5 | 100 | 41 | 91.1 | 26 | 89.7 | 15 | 93.8 | |
pfpm2/3 CNV Total n = 98 |
Single copy | 83 | 84.7 | 39 | 83.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 75 | 2 | 40 | 2 | 33.3 | 44 | 86.3 | 24 | 77.4 | 20 | 100 |
Multiple copies | 15 | 15.3 | 8 | 17.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 25 | 3 | 60 | 4 | 66.7 | 7 | 13.7 | 7 | 22.6 | 0 | 0 | |
pfmdr1 CNV Total n = 80 |
Single copy | 76 | 95.0 | 45 | 95.7 | 0 | 0 | 4 | 80 | 4 | 80 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 31 | 94 | 18 | 94.7 | 14 | 100 |
Multiple copies | 3 | 3.8 | 2 | 4.3 | 0 | 0 | 1 | 20 | 1 | 20 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 1 | 5.3 | 0 | 0 |
aFrequency data are presented as the percentage of sequences that carried a mutation out of the total number successfully sequence