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. 2023 Aug 9;22:231. doi: 10.1186/s12936-023-04658-4

Table 4.

Summary of PfK13, pfcrt, pfmdr1 SNP frequencies, pfpm2/3 and pfmdr1 CNVs in Sumba and Papua

Gene Haplotype (All) total Total Sumba Sumba Total Papua Papua
Year 2010 2011 2012 2015 2016 2017 2018 Year 2020 2021
Number %a Number %a Number %a Number %a Number %a Number %a Number %a Number %a Number %a Number %a Number %a Number %a

PfK13

Total n = 101

L396F 1 1 1 20 0 0 0 0 1 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0
I526V 1 1 1 16.7 0 0 0 0 0 0 0 0 0 0 0 0 1 16.7 0 0 0 0 0 0
N537S 1 1 1 20 0 0 0 0 1 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0
M579I 1 1 1 20 0 0 0 0 1 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0
WT 97 96 46 92 20 100 5 100 2 40 5 100 4 100 5 100 6 100 51 100 27 100 24 100

pfcrt

Total n: 31

I356L 22 71 18 95 3 15 3 60 4 80 3 60 2 50 3 60 0 0 4 33.3 2 50 2 25
WT 9 29 1 5.3 17 85 2 40 1 20 2 40 2 50 2 40 0 0 8 66.7 2 50 6 75

pfmdr1

Total n = 93 Positions 1034, 1042, 1246

SDD 19 20.4 15 31.3 3 15.8 4 80 2 40 3 75 1 33.3 2 40 0 0 4 8.9 3 10.3 1 6.3
SND 74 79.6 33 68.8 16 84.2 1 20 3 60 1 25 2 66.7 3 60 5 100 41 91.1 26 89.7 15 93.8

pfpm2/3 CNV

Total n = 98

Single copy 83 84.7 39 83.0 0 0 0 0 0 0 0 0 3 75 2 40 2 33.3 44 86.3 24 77.4 20 100
Multiple copies 15 15.3 8 17.0 0 0 0 0 0 0 0 0 1 25 3 60 4 66.7 7 13.7 7 22.6 0 0

pfmdr1 CNV

Total n = 80

Single copy 76 95.0 45 95.7 0 0 4 80 4 80 0 0 0 0 0 0 0 0 31 94 18 94.7 14 100
Multiple copies 3 3.8 2 4.3 0 0 1 20 1 20 0 0 0 0 0 0 0 0 1 3 1 5.3 0 0

aFrequency data are presented as the percentage of sequences that carried a mutation out of the total number successfully sequence