Key resources table.
| Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Strain, strain background (Danio rerio, AB) | Tg(mpeg1.4:mCherry-F)ump2 | PMID:24567393 | N/A | |
| Strain, strain background (D. rerio, AB) | TgBAC(mpx:GFP)i114 | PMID:16926288 | N/A | |
| Strain, strain background (D. rerio, AB) | Tg(–5.1myl7:DsRed2-NLS)f2Tg | PMID:12464178 | N/A | |
| Strain, strain background (D. rerio, AB) | Tg(fli1a:EGFP)y1 | PMID:12167406 | N/A | |
| Antibody | Anti-Mpx (rabbit polyclonal) | GeneTex | Cat# GTX128379; RRID:AB_2885768 | IF (1:500) |
| Antibody | Anti-mCherry (chicken polyclonal) | Abcam | Cat# ab205402; RRID:AB_2722769 | IF (1:250) |
| Antibody | Anti-HMOX1 (rabbit polyclonal) | Aviva | Cat# ARP45222_P050; RRID:AB_2046270 | IF (1:100) |
| Antibody | Anti-Digoxigenin Fab fragments antibody, AP conjugated (sheep polyclonal) | Roche | Cat# 11093274910; RRID:AB_514497 |
ISH (1:1000) |
| Sequence-based reagent | hbaa1_F | This paper | qPCR primer | AAGCCCTCGCCAGAATGC |
| Sequence-based reagent | hbaa1_R | This paper | qPCR primer | ACCCATGATAGTCTTTCCGTGC |
| Sequence-based reagent | timp4.3_F | This paper | qPCR primer | GCAGAGACGCGGAGGTGAAG |
| Sequence-based reagent | timp4.3_R | This paper | qPCR primer | CGGGACCACAGCTACAAGCC |
| Sequence-based reagent | eef1a1l1_F | PMID:32359472 | qPCR primer | CTGGAGGCCAGCTCAAAC |
| Sequence-based reagent | eef1a1l1_R | PMID:32359472 | qPCR primer | ATCAAGAAGAGTAGTACCGCTAGCATTAC |
| Sequence-based reagent | hbaa1_F | This paper | ISH primer | ACGCAGCGATGAGTCTCT |
| Sequence-based reagent | hbaa1_R | This paper | ISH primer | CATGCATGAGTTGTTAAGAGTG |
| Sequence-based reagent | timp4.3_F | This paper | ISH primer | CAGACACGAAGGACATGC |
| Sequence-based reagent | timp4.3_R | This paper | ISH primer | CACCGAATGTATGTGTTTATTAAC |
| Sequence-based reagent | hmox1a_F | This paper | ISH primer | TCAGAGCATTCGAGTTCAAC |
| Sequence-based reagent | hmox1a_R | This paper | ISH primer | ACAGTTTATTAATCTTGCATTTACACAG |
| Commercial assay or kit | Click-iT EdU Cell Proliferation Kit for Imaging, Alexa Fluor 647 dye | Thermo Fisher | Cat# C10340 | |
| Commercial assay or kit | In Situ Cell Death Detection Kit, TMR red | Sigma-Aldrich | Cat# 12156792910 | |
| Commercial assay or kit | miRNeasy micro Kit | QIAGEN | Cat# 217084 | |
| Commercial assay or kit | Chromium single cell 3’ Reagent kits v3 | 10x Genomics | N/A | |
| Commercial assay or kit | NBT/BCIP stock solution | Roche | Cat# 11681451001 | ISH (1:50) |
| Chemical compound, drug | Clodronate liposome | Liposoma | Cat# C-005 | 10 μl per fish |
| Chemical compound, drug | DIG RNA labeling mix | Roche | Cat# 11277073910 | ISH |
| Software, algorithm | NOIseq | PMID:26184878 | RRID:SCR_003002 | |
| Software, algorithm | WebGestalt | PMID:15980575 | RRID: SCR_006786 |
|
| Software, algorithm | CellRanger | 10x Genomics | RRID: SCR_023221 |
|
| Software, algorithm | Seurat | PMID:29608179 | RRID: SCR_007322 |
|
| Software, algorithm | Monocle3 | PMID:30787437 | RRID: SCR_018685 |
|
| Software, algorithm | Ligand-Receptor Interaction Network Analysis | PMID:26198319 | N/A | |
| Software, algorithm | Cytoscape | PMID:14597658 | RRID: SCR_003032 |