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. 2023 Jul 27;39(8):btad463. doi: 10.1093/bioinformatics/btad463

Figure 4.

Figure 4.

Performance benchmark results of reimplemented snp-pileup versus stock version. Note that the stock implementation of snp-pileup does not support multi-threading. (A) Results using the GIAB HG002 and HG004 Illumina 2x250 BAM files with an NVMe SSD array available on AWS. (B) Results using the rapid autopsy Bn2 and Germ1 BAM files with an NVMe SSD array available on AWS. (C) Results using the GIAB HG002 and HG004 Illumina 2x250 BAM file with a Lustre distributed file system. (D) Results using the rapid autopsy Bn2 and Germ1 BAM file with a Lustre distributed file system.