Table 10.
Summary of non-coding RNA in the EC_S1 and EC_N1 assemblies.
| Type | EC_S1 | EC_N1 | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Number (#) | Average length (bp) | Total length (bp) | Percentage (%) | Number (#) | Average length (bp) | Total length (bp) | Percentage (%) | ||
| rRNA | Total | 1,163 | 306.35 | 356,281 | 0.007 | 888 | 6302.03 | 368966 | 0.0071 |
| 18 S | 43 | 1,819.65 | 78,245 | 0.0015 | 50 | 1772.52 | 88626 | 0.0017 | |
| 28 S | 34 | 4,467.53 | 151,896 | 0.003 | 44 | 4260.2 | 187449 | 0.0036 | |
| 5 S | 1,080 | 115.96 | 125,240 | 0.0025 | 790 | 116.81 | 610 | 0 | |
| 5.8 S | 6 | 150 | 900 | 0 | 4 | 152.5 | 92281 | 0.0018 | |
| ncRNA | Total | 7,770 | 127.53 | 990,911 | 0.0194 | 7701 | 544.67 | 984269 | 0.0189 |
| other | 173 | 146.58 | 25,358 | 0.0005 | 165 | 154.86 | 25552 | 0.0005 | |
| snRNA | 1,180 | 105.15 | 124,074 | 0.0024 | 1065 | 105.16 | 111993 | 0.0021 | |
| miRNA | 6,188 | 130.12 | 805,169 | 0.0158 | 6246 | 129.99 | 811926 | 0.0156 | |
| spliceosomal | 229 | 158.56 | 36,310 | 0.0007 | 225 | 154.66 | 34798 | 0.0007 | |
| regulatory | cis-regulatory | 171 | 45.96 | 7,859 | 0.0002 | 205 | 49.34 | 10115 | 0.0002 |
| tRNA | tRNA | 1,913 | 75.2 | 143,855 | 0.0028 | 2039 | 75.34 | 153619 | 0.0029 |