Table 3.
IFITM retrogenes in primate species with location in introns of other genes.
| No. | Species and location | Direction | Flanking gene | Direction | Annotated | Accession number | Direction | Flacking gene | In intron | Direction | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 5 | Chr. 12 | > | SH2B3 | > | IFITM3P5 pseudo | NG_006225.2 | < | BRAP | in | < | ATXN2 |
| 6 | Chr. 12 | < | AMIGO2 | < | IFITM3P6 pseudo | NG_006230.2 | < | RPAP3 | in | > | PCED1B |
| Pan paniscus | |||||||||||
| 2 | Chr. 12 | > | SH2B3 | > | IFITM3P5 pseudo | XM_034934516.1 | < | BRAP | in | < | ATXN2 |
| Macaca mulatta | |||||||||||
| 1 | Chr. 16 | < | CTC1 | < | 3 like 8 (owm P1) | XM_001112566.4 | > | RANGRF | in | > | PFAS |
| 2 | Chr. 1 | > | ATP5PB | > | 3 like (owm P2) | XM_001106166.4 | > | RAP1A | in | < | TMIGD3 |
| 4 | Chr. 10 | < | SLC25A17 | > | 3 ps (owm P4) | XR_001447798.2 | > | XPNPEP3 | in | < | ST13 |
| 6 | Chr. 9 | < | OIT1 | > | 3 ps | XR_001447146.2 | > | MICU1 | in | < | MCU |
| 7 | Chr. 11 | > | SH2B3 | > | P5 | XR_001448216.2 | < | BRAP | in | < | ATXN2 |
| Cercocebus atys | |||||||||||
| 2 | Unplaced | > | ATP5PB | > | 3 like (owm P2) | XR_001017992.1 | > | RAP1A | in | < | TMIGD1 |
| 3 | Unplaced | End | > | 3 ps | XR_001010903.1 | > | TAB3 | in | > | dystropine-like | |
| 4 | Unplaced | < | CTC1 | < | 3 like 8 (owm P1) | XM_012051598.1 | > | RANGRF | in | > | PFAS |
| 6 | Unplaced | < | SLC25A17 | > | 3 ps (owm P4) | XR_001010110.1 | > | XPNPEP3 | in | < | ST13 |
| 8 | Unplaced | > | SH2B3 | > | P5 | XR_001010401.1 | < | BRAP | in | < | ATXN2 |
| Rhinopithecus roxellana | |||||||||||
| 1 | Chr. 12 | < | WTIP | > | 3 ps | XR_747609.2 | < | PDCD2L | in | < | UBA2 |
| 2 | Chr. 19 | < | C1QL1 | > | 3 like | XM_030922644.1 | > | NMT1 | in | < | DCAKD |
| 4 | Chr. 10 | > | WASHC4 | > | 3 ps | XR_004059464.1 | < | NUAK1 | in | < | APPL2 |
| 5 | Chr. 5 | < | ATP10A | > | 3 ps | XR_004057469.1 | > | GABRB5 | in | < | GABRB3 |
| 6 | Chr. 13 | < | SLC25A17 | > | 3 ps | XR_004052498.1 | > | XPNPEP3 | in | < | ST13 |
| Aotus nancymaae | |||||||||||
| 3 | Unplaced | > | EGF | > | 3 ps | XR_001104807.2 | > | ENPEP | in | < | ELOVL6 |
| Saimiri boliviensis | |||||||||||
| 6 | Unplaced | < | RPH3a | > | 3 like | XM_039472141.1 | > | RPL6 | in | < | PTPN11 |
| 9 | Unplaced | < | MTERF1 | > | 3 like | XM_039473093.1 | < | CYP51A1 | in | > | AKAP9 |
| 15 | Unplaced | > | LRRFIP2 | > | 3 like | XM_039461847.1 | > | EPM2AIP1 | in | < | MLH1 |
| 19 | Unplaced | < | KIAA1586 | > | 3 like | XM_039467413.1 | > | DST | in | < | BEND6 |
| Carlito syrichta | |||||||||||
| 1 | Unplaced | > | SVOPL | > | 3 ps | XR_504221.2 | End | in | < | Trim24 | |
| 6 | Unplaced | > | SPINK4 | > | 3 ps | XM_008074487.1 | > | CHMP5 | in | < | BAG1 |
in - located in introns.