| ACTH | adrenocorticotropic hormone |
| ACPA | anti-citrullinated protein antibody |
| AP-1 | activator protein 1 |
| BMDM | bone marrow-derived monocyte/macrophage |
| CAPRA | Circadian Administration of Prednisone in RA |
| CIA | collagen-induced arthritis |
| Ctsk | cathepsin K |
| CCL2 | C-C- motif ligand 2 |
| CRP | C-reactive protein |
| CXCL1 | C-X-C motif ligand 1 |
| DMARD | disease-modifying anti-rheumatic drug |
| GM-CSF | granulocyte macrophage-colony stimulating factor |
| HALO | hours after the light was turned on |
| IFN | interferon |
| IFR3 | interferon regulatory factor 3 |
| IL-1 | interleukin-1 |
| FLS | fibroblast-like synoviocyte |
| H3K27ac | acetylation of lysine 27 in histone H3 |
| H3K27me3 | trimethylation of lysine 27 in histone H3 |
| HMGB1 | high mobility group box 1 |
| JAK | Janus kinase |
| KO | knockout |
| LPS | lipopolysaccharide |
| MAPK | mitogen-activated protein kinase |
| M-CSF | macrophage-colony stimulating factor |
| MLS | macrophage-like synoviocyte |
| MMP | matrix metalloproteinase |
| MTX | methotrexate |
| Nfatc1 | nuclear factor of activated T cells 1 |
| NF-kB | nuclear factor kappa B subunit 1 |
| NK cell | natural killer cell |
| NKT cell | natural killer T cell |
| Opg | osteoprotegerin |
| PAS | Per-Armt-Sim domain |
| PKA | protein kinase A |
| PRR | pattern recognition receptor |
| RA | rheumatoid arthritis |
| RANKL | receptor activator of nuclear factor-κB ligand |
| Rev-erbα | reverse orientation c-erbAα |
| RORα | retinoic acid receptor-related orphan receptor α |
| RRE | Rev-erb/ROR response element |
| SAA | serum amyloid A |
| TGFβ | transforming growth factor β |
| TLR2 | toll-like receptor 2 |
| WT | wild type |
| ZT | Zeitgeber Time |