Key resources table
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Deposited data | ||
Morphological segmentation | Vishwanathan et al. 2021 | https://seung-lab.github.io/zebrafish/data/ |
Synaptic connectivity tables | Vishwanathan et al. 2021 | https://seung-lab.github.io/zebrafish/data/ |
C. elegans wiring diagram | Cook et al. 2019 | https://www.wormwiring.org/pages/emmonslab.html |
Cell skeletons used for analysis | Vishwanathan et al. 2021 | https://seung-lab.github.io/zebrafish/data/ |
Analysis intermediate data | This paper | https://github.com/RunzheYang/ZfishCycles |
Software and algorithms | ||
Python 3 | Python.org | python.org |
Graph-Tool | Peixoto, 2014 | https://graph-tool.skewed.de |
Neuroglancer | https://github.com/google/neuroglancer | |
Data analysis source code | This paper | https://github.com/RunzheYang/ZfishCycles |