Table 1.
Selected DEGs in FvWRKY50 CR 3-16 leaves compared with WT leaves, and comparison of these genes between WT and FvWRKY50 CR 2-9
| Functional category | Gene ID | Annotation | CR 3-16 vs WT log 2 fold change | CR 2-9 vs WT log 2 fold change |
|---|---|---|---|---|
| Plant hormone | ||||
| Auxin | FvH4_2g20150 | Indole-3-pyruvate monooxygenase YUCCA3 | −2.63 | −1.73 |
| FvH4_7g11280 | Auxin responsive protein SAUR36 | 1.05 | 0.66 | |
| FvH4_2g10850 | Auxin responsive protein ARG7 | −2.89 | −0.09 | |
| FvH4_5g22810 | Auxin responsive protein ARG7 | −2.36 | −0.53 | |
| FvH4_5g22620 | Auxin responsive protein ARG7 | −1.66 | −0.32 | |
| FvH4_5g22780 | Auxin responsive protein ARG7 | −1.73 | −1.65 | |
| FvH4_6g02870 | Auxin-responsive protein IAA4 | −1.45 | −0.38 | |
| FvH4_4g04700 | Auxin-responsive protein IAA13 | −1.15 | −0.45 | |
| FvH4_6g30850 | Auxin-responsive protein IAA17 | −1.41 | −0.14 | |
| FvH4_2g28970 | Auxin-responsive protein IAA29 | −2.09 | −0.38 | |
| FvH4_4g26700 | Auxin-responsive protein IAA32 | −3.14 | −1.25 | |
| FvH4_2g38760 | Auxin response factor 5 | 1.13 | −0.23 | |
| FvH4_3g32000 | Auxin response factor 18 | −1.79 | −0.73 | |
| FvH4_6g30860 | Auxin-induced protein AUX22 | −2.04 | −0.89 | |
| Abscisic acid | FvH4_3g16730 | 9-cis-epoxycarotenoid dioxygenase NCED | 1.98 | 1.54 |
| FvH4_3g36810 | Abscisic acid 8′-hydroxylase 2 | 2.49 | 1.50 | |
| FvH4_2g14100 | Abscisic acid 8′-hydroxylase 3 | −2.30 | −0.57 | |
| FvH4_6g53030 | β-Glucosidase 13 | 1.36 | −0.11 | |
| FvH4_6g39430 | UDP-glucuronosyl and UDP-glucosyl transferase | 3.04 | 0.95 | |
| FvH4_3g16470 | Abscisic acid receptor PYL3 | −3.29 | −2.15 | |
| FvH4_3g07720 | Abscisic acid receptor PYL13 | −3.12 | −3.87 | |
| Jasmonate | FvH4_2g40510 | Allene oxide synthase 1, AOS1 | 2.39 | 0.11 |
| FvH4_2g07410 | Allene oxide synthase 3, AOS3 | 3.04 | 0.84 | |
| FvH4_5g32640 | Oxophytodienoate reductase 1, OPR1 | 1.72 | 0.38 | |
| FvH4_5g32690 | NADH oxidase family, OPR2 | 4.16 | 1.73 | |
| FvH4_1g08454 | NADH oxidase family, OPR3 | 3.32 | 2.14 | |
| FvH4_7g00440 | Lipoxygenase, LOX | 2.85 | 2.18 | |
| FvH4_2g39441 | Jasmonic acid carboxyl methyltransferase 2 | 1.97 | 0.77 | |
| Gibberellin | FvH4_3g02670 | Gibberellin 2-β-dioxygenase 8 | 1.33 | 0.91 |
| FvH4_2g38480 | Gibberellin-regulated protein 1 | 1.02 | −0.31 | |
| FvH4_6g48590 | Gibberellin-regulated protein 4 | −2.63 | −0.49 | |
| FvH4_5g14950 | Gibberellin-regulated protein 6 | −3.01 | −1.97 | |
| Transcription factors | ||||
| AP2/ERF family | FvH4_7g30930 | Ethylene-responsive transcription factor CRF3 | 1.89 | 1.72 |
| FvH4_1g03190 | Ethylene-responsive transcription factor WIN1 | −1.11 | −0.49 | |
| FvH4_6g26090 | Ethylene-responsive transcription factor 53 | 1.36 | 0.56 | |
| FvH4_4g03460 | Ethylene-responsive transcription factor 98 | −1.11 | −0.06 | |
| FvH4_2g13240 | Ethylene-responsive transcription factor 110 | 3.52 | −0.73 | |
| bZIP family | FvH4_2g36400 | bZIP transcription factor 9 | −1.47 | −0.88 |
| FvH4_7g25870 | bZIP transcription factor 18 | −1.05 | −1.01 | |
| FvH4_6g26970 | bZIP transcription factor 34 | −2.3 | −1.68 | |
| FvH4_3g24830 | bZIP transcription factor TGA | 1.25 | 0.34 | |
| bHLH family | FvH4_4g07090 | Transcription factor bHLH35 | 1.61 | 0.18 |
| FvH4_7g24720 | Transcription factor bHLH51 | −1.27 | 0.10 | |
| FvH4_2g09030 | Transcription factor bHLH63 | −1.29 | −0.61 | |
| FvH4_7g17790 | Transcription factor bHLH67 | −1.03 | −0.65 | |
| FvH4_1g18930 | Transcription factor bHLH93 | −1.63 | 0.09 | |
| FvH4_2g39400 | Transcription factor bHLH110 | 1.75 | 0.52 | |
| FvH4_4g20270 | Transcription factor bHLH148 | −1.14 | −0.95 | |
| FvH4_3g09050 | Transcription factor HLH162 | −3.85 | −0.16 | |
| MYB family | FvH4_5g19400 | Transcription factor MYB3 | −1.62 | −2.35 |
| FvH4_7g16990 | MYB-like transcription factor 4 | 1.74 | 1.76 | |
| FvH4_4g03610 | Transcription factor MYB14 | 1.99 | 0.43 | |
| FvH4_6g08620 | Transcription factor MYB61 | −1.84 | −0.75 | |
| FvH4_5g11930 | Transcription factor MYB62 | 3.12 | 1.65 | |
| FvH4_1g02690 | Transcription factor MYB82 | −3.62 | −0.39 | |
| FvH4_2g31100 | Transcription factor MYB123-like | 2.43 | 2.34 | |
| NAC family | FvH4_3g20700 | NAC transcription factor RIF | 1.68 | −0.74 |
| FvH4_2g16180 | NAC transcription factor 6 | 1.55 | 0.53 | |
| FvH4_6g51660 | NAC transcription factor 8 | 1.72 | 0.70 | |
| FvH4_6g33050 | NAC transcription factor 35 | −1.21 | −0.12 | |
| FvH4_5g21670 | NAC transcription factor 71 | 1.03 | 1.11 | |
| FvH4_6g19430 | NAC transcription factor 90 | 1.73 | 0.46 | |
| WRKY family | FvH4_1g16480 | WRKY transcription factor 15 | 1.24 | −0.09 |
| FvH4_3g39850 | WRKY transcription factor 24 | 1.15 | 0.02 | |
| FvH4_2g41070 | WRKY transcription factor 40 | 3.35 | 0.52 | |
| FvH4_1g26200 | WRKY transcription factor 42 | 1.87 | −0.54 | |
| FvH4_2g31400 | WRKY transcription factor 50 | 2.70 | 0.92 | |
| FvH4_5g15340 | WRKY transcription factor 72 | 2.42 | 0.97 | |
| Light responsive | FvH4_4g22790 | Light-regulated protein 1 | −2.06 | −0.39 |
| FvH4_2g20400 | Early light-induced protein 1 | 1.51 | 2.71 | |
| FvH4_7g15980 | Light-sensor protein kinase PHY1 | 1.07 | 0.17 | |
| FvH4_6g02940 | Light-inducible protein CPRF2 | −1.73 | −1.03 | |
| FvH4_7g26541 | Light-harvesting complex-like protein 3 | 1.36 | 2.21 |