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. 2023 Aug 11;18(8):e0289865. doi: 10.1371/journal.pone.0289865

Table 3. Parameters of DD-SIMCA models and performances in terms of sensitivity and specificity.

Metrics a priori Ciprofloxacin model a posteriori Ciprofloxacin model a priori Metronidazole model a posteriori Metronidazole model
Spectral range 961–1624 nm 961–1624 nm 961–1624 nm 961–1624 nm
Preprocessing SNV, SG (1, 2,15) SNV, SG (1, 2,15) SNV, SG (1, 2,15) SNV, SG (1, 2,15)
α 0.01 0.01 0.01 0.01
Number of PC 2 3 2 5
Median Sn Cal (% of spectra) (95% CI) 99.5 (97.9–100) 98.4 (96.3–99.5) 97.4 (95.3–99.0) 97.4 (95.3–99.5)
Median Sn Val (% of spectra) (95% CI) 96.7 (91.1–100) 94.4 (88.9–97.8) 88.9 (81.1–97.8) 88.9 (80.0–96.7)
Median Sn test (% of samples) (95% CI) 98.0 (90.0–100) 100 (99.3–100) 75.4 (68.3–93.7) 100 (97.9–100)
rejected non-members samples/total number of non-members samples (95% CI) 5/5 (5–5) 5/5 (5–5) 4/4 (4–4) 4/4 (4–4)

SNV = Standard Normal Variate

SG = Savitzky-Golay derivative (derivative order, polynomial order, window size)

Sn = Sensitivity

CI = confidence interval delimited by the 2.5th and 97.5th percentile of the empirical distribution obtained by bootstrap.