Table 2.
Non-urological cancer urine cell-free DNA liquid biopsy studies.a
Cancer type |
Cancer patients enrolled |
Assessed biomarkers | ucfDNA analytical technique |
Study purpose | Tumor mutation profiling comparison |
Year | Reference |
---|---|---|---|---|---|---|---|
NSCLC | 63 | EGFR (L858R, T790M) mutations | ddPCR, NGS | Rociletinib (EGFR TKI) response | L858R: 75% sensitivity and 100% specificity T790M: 72% sensitivity and 96% specificity |
2016 | Reckamp et al. (32) |
NSCLC | 9 | EGFR mutations | ddPCR, NGS | Osimertinib (EGFR TKI) response | N/A | 2017 | Husain et al. (33) |
NSCLC | 150 | KRAS mutation | ddPCR | Predicting mutations and outcomes | 93% concordance with tissue | 2018 | Xie et al. (34) |
NSCLC | 81 | EGFR mutations | ddPCR | Diagnosis and management | 60% sensitivity and 100% specificity | 2021 | Satapathy et al. (35) |
Breast | 250 | PIK3CA mutations | ddPCR | Detection, monitoring, disease relapse | 91% sensitivity and 100% specificity | 2020 | Zuo et al. (7) |
Breast | 200 | PIK3CA mutations | ddPCR | Treatment and disease relapse | 77% sensitivity | 2020 | Zhang et al. (36) |
Breast | 300 | PIK3CA and TP53 mutations | N/A | Cancer monitoring | 97% concordance with tissue biopsy | 2020 | Guan et al.(37) |
Colorectal | 20 | KRAS mutations | qPCR, RE-PCR | Cancer detection | 95% sensitivity (200 μL fluid used) | 2008 | Su et al. (6) |
Colorectal | 92 | cfDNA (SEPTIN9 & SDC2) methylation levels | qMSP | Cancer detection | 70% sensitivity and 86% specificity | 2021 | Bach et al.(38) |
Glioma | 35 | 52 commonly mutated glioma genes, fragmentation patterns | WES, sWGS | Cancer detection | N/A | 2021 | Mouliere et al. (39) |
Pancreatic | 56 | KRAS mutations | ddPCR | Cancer detection | 42% sensitivity | 2019 | Terasawa et al. (40) |
Abbreviations: NSCLC, non-small cell lung cancer; ddPCR, droplet digital PCR; NGS, next-generation sequencing; EGFR, epidermal growth factor receptor; cfDNA, cell-free DNA; qPCR, quantitative PCR; RE-PCR, restriction enriched polymerase chain reaction; qMSP, quantitative methylation specific PCR; WES, whole-exome sequencing; sWGS, shallow whole-genome sequencing; N/A, not performed.