Table 1.

Open source neuroscience software and related online communities.

Software Name	Website	Mac/PC/Linux Compatible	Summary
Napari	https://napari.org/	All	Image visualization/analysis suite
Open eye track	https://github.com/chand-lab/openEyeTrack	Linux	Fast eye tracker
Pirecorder	https://jollejolles.github.io/pirecorder/	Raspberry Pi	Camera recording system based on Raspberry Pi card sized computer
jsPsych	https://www.jspsych.org	Web browser based
Bonsai-RX	https://bonsai-rx.org/	Windows	A suite to design and analyze experiments of all sorts. Several plugins and hardware Integration made easy.
Deeplabcut	http://www.mackenziemathislab.org/deeplabcut	All	Markless movement tracking using deep neural networks
TGAC browser	http://browser.tgac.ac.uk/	Web browser	Genomic browser to visualize annotations from Ensembl database Schema
OME	https://www.openmicroscopy.org/	All	OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
MicroManager	http://www.micro-manager.org	All	Suite for microscope control. It allows control of systems that are no longer supported by manufacturers.
CellFinder	https://github.com/brainglobe/cellfinder	All	Automated 3D cell detection from whole-brain images
Neurodata without Borders	https://www.nwb.org/	All	Data Standard for neurophysiology.
JASP	https://jasp-stats.org/	All	Statistics software without programming (includes frequentist and Bayesian analysis)
Open Source Brain	https://www.opensourcebrain.org/	All	Computational models of neural systems
Computational Neuroscience	https://github.com/asoplata/open-computational-neuroscience-resources	All	Open Computational Neuroscience Resources
Open BCI	https://openbci.com/	All	Open-source tools for biosensing and neuroscience