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. 2023 Aug 15;14:4935. doi: 10.1038/s41467-023-40426-3

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 8 — a–c The predicted inter-chain contact maps by DeepTMP, AlphaFold-Multimer (AFM), and ground-truth of native complexes for three example targets, 6UWM (a), 1UUN (b), and 5SVK (c). For reference, the native structures of three targets are also shown on the left. d, e The top predicted complex structures of our protein-protein docking program HSYMDOCK with (left panels) and without (right panels) using the predicted inter-chain contacts by DeepTMP on two targets, 4K7R (d) and 2JAF (e). The upper row is the top view and the lower row is the side view.