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. 2023 Aug 3;335:199178. doi: 10.1016/j.virusres.2023.199178

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© 2023 The Author(s)

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

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Fig 7 — Genome comparison and phylogenetic tree analysis of phiPA1-3 with related phages. (A) The tree was constructed using VIPTree, by uploading phiPA1-3 genome sequence, and compared with all references in the database, phiPA1-3 was clustered with related Pseudomonas phages, the selection filter in Host group set with “Pseudomonadota”. (B) Alignment of selected genomes similar to phiPA1-3. Colored blocks show% identity of sequence. The comparison was carried out using VIPTree (https://www.genome.jp/viptree/). (C) The phylogenetic tree generated by VICTOR using the complete genomic sequence selected from various members of subfamilies and genera of Pseudomonas N4-like phages. (D) Phylogenetic tree of phage-encoded large terminase subunit (ORF85) of phiPA1-3. The amino acid sequences of the large terminase subunits were compared using MEGA11; the tree was generated using the neighbor-joining method and 1000 bootstrap replicates.