Table 2.
Comparison of the relative abundance of dfrB gene variants (copies per 16 S rRNA gene copies) in WWTP effluents and river samples.
| Gene variant | Wastewater samples | River samples | Higher in | adj. p value | Signif. code | Confirmed by split sampling in |
|---|---|---|---|---|---|---|
| dfrB1 | 3.7e−05 | 1.8e−06 | Wastewater | 1.9e−17 | *** | 2/2 subsets |
| dfrB2 | 3.9e−06 | 1.2e−06 | Wastewater | 6.3e−04 | *** | 2/2 subsets |
| dfrB3 | 6.6e−05 | 5.9e−06 | Wastewater | 1.5e−05 | *** | 2/2 subsets |
| dfrB4 | 1.9e−05 | 4.7e−06 | Wastewater | 2.4e−07 | *** | 2/2 subsets |
| dfrB5 | 1.6e−06 | 0e+00 | Wastewater | 0.0064 | ** | 1/2 subsets |
| dfrB7 | 4.7e−06 | 0e+00 | Wastewater | 8.8e−06 | *** | 2/2 subsets |
| dfrB9 | 0e+00 | 4.6e−05 | River samples | 3.5e−06 | *** | 2/2 subsets |
| dfrB10 | 2.4e−06 | 2e−04 | River samples | 1.3e−17 | *** | 2/2 subsets |
| dfrB13 | 0e+00 | 2.2e−05 | River samples | 0.0011 | ** | 1/2 subsets |
| dfrB14 | 3.5e−06 | 1.7e−05 | River samples | 0.26 | n.s. | |
| dfrB15 | 7.8e−07 | 2.3e−06 | River samples | 1 | n.s. | |
| dfrB16 | 3.9e−07 | 1.2e−06 | River samples | 0.65 | n.s. | |
| dfrB17 | 0e+00 | 1.2e−06 | River samples | 0.44 | n.s. | |
| dfrB19 | 0e+00 | 3.5e−06 | River samples | 0.14 | n.s. | |
| dfrB20 | 0e+00 | 5.9e−07 | River samples | 0.57 | n.s. | |
| dfrB21 | 0e+00 | 5.9e−07 | River samples | 0.57 | n.s. |
Reported p values refer to a Wilcoxon rank sum test with the null hypothesis being that the relative abundances of dfrB gene variants are equal in both groups. Each variant was considered a distinct hypothesis and p values were adjusted accordingly (***: p < 0.001, **: p < 0.01, n.s.: not significant). The rightmost column indicates whether the significance of contrasts (adj. p value < 0.05) could be verified on independent data subsets, each representing 50% of the bacterial DNA from wastewater and river samples, respectively.