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. 2023 Jun 15;17(9):1396–1405. doi: 10.1038/s41396-023-01453-6

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — A Unrooted maximum-likelihood phylogenetic tree inferred from multiple sequence alignments of GTDB bacterial marker genes from MAGs. The tree was generated with GTDB-Tk and displayed using iTol [80]. B MAGs are classified according to their isolation biome and growth rate status (copiotroph or oligotroph) for each of the main GTDB taxa. MAGs included members affiliated with the Actinobacteriota (1453), Proteobacteria (including 1063 MAGs from Gammaproteobacteria and 869 MAGs from Alphaproteobacteria), Acidobacteriota (850), Bacteroidetes (440), Patescibacteria (322), Verrucomicrobiota (248), Gemmatimonadota (200), Myxococcota (187), Planctomycetota (133), Chloroflexota (127), Nitrospirota (76), Eisenbacteria (56), Methylomirabilota (51), Desulfobacterota (47), Desulfobacterota_B (45), and Firmicutes (36), among others (Supplementary Table 4).