TABLE 2.

Population level summary of annotation of SNPs in the Tigray cattle.

All consequences	Abergelle	Arado	Begait	Erob	Raya
No. of samples	11	11	11	10	11
Bi-allelic variants processed	29563964	29713124	28932547	28045045	29393582
Splice donor variant	707	684	693	672	690
Splice acceptor variant	439	452	442	429	435
Stop gained	1682	1748	1706	1648	1765
Stop lost	245	238	237	239	243
Start lost	397	406	382	373	413
Missense variant	149334	150764	146883	141733	149448
Splice region variant	40755	41135	39987	38861	40791
Synonymous variant	228481	229776	224200	217399	228249
Stop retained variant	169	183	169	160	180
Coding sequence variant	1	1	1	1	1
Mature miRNA variant	123	125	121	120	125
5_prime UTR variant	49794	49766	48751	46913	50016
3_prime UTR variant	137652	138671	135235	131341	137754
Non-coding transcript exon variant	31400	31309	30515	29622	31084
Intron variant	22387867	22473356	21940886	21255569	22194958
Non-coding transcript variant	502772	505660	496259	476848	500512
Upstream gene variant	2074721	2090124	2042625	1979084	2075740
Downstream gene variant	2111713	2121229	2070242	2007161	2104907
Intergenic variant	17584768	17682416	17197428	16677542	17502131