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. 2023 Jul 13;21:3920–3932. doi: 10.1016/j.csbj.2023.07.004

Table 2.

Differences between corresponding clusters when obtained by Daura, Cnn and UMAPLnk. Values represent dbikl evaluated via Eq.(6) and tkl (in parenthesis) obtained via Eq.(8). Results reflect what is visually evident from Fig. 14. Larger values of dbikl and likewise smaller values of tkl indicate better agreement between methods. Note that UMAPLnk produced not more than 2 clusters, and hence only the first two clusters of each method were included in the comparison.

dbikl(tkl) cluster 1
cluster 2
Cnn UMAPLnk Cnn UMAPLnk
cutoff = 0.05 nm Daura 1.78 (288) 1.83 (273) 0.17 (896) 0.33 (1182)
Cnn 0 24.68 (73) 0 1.05 (563)
cutoff = 0.1 nm Daura 9.06 (170) 8.99 (171) 0.83 (1095) 0.83 (1099)
Cnn 0 217 (8.66) 0 149 (20.8)