TABLE 1.

Isolate-specific single nucleotide polymorphisms among all C. lusitaniae isolates relative to the FDA-ARGOS strain 655 reference genome

Isolate	Chromosome no.	Position (bp)	Variant type	Nucleic acid		Alternate frequency	Amino acid change	Gene
				Reference	Alternate
D1.1	2	1137176	Intergenic	G	A	1.00	NAa	NA
	5	768831	Synonymous	C	T	1.00	Gly202Gly	RAD16
D1.3	5	985590	Missense	C	A	1.00	Asn181Lys	RLM1
D1.4	2	1137176	Intergenic	G	A	1.00	NA	NA
D2.2	2	1137176	Intergenic	G	A	1.00	NA	NA
D3.1	2	1137176	Intergenic	G	A	1.00	NA	NA
D3.2	5	985590	Missense	C	A	1.00	Asn181Lys	RLM1
	6	489657	Intergenic	C	T	1.00	NA	NA
D4.1	2	1137176	Intergenic	G	A	1.00	NA	NA
	4	234620	Missense	G	T	1.00	Asp340Tyr	EPL1
D6.1	2	1255851	Missense	G	A	1.00	Arg1352Cys	FKS1
D6.2	2	1137176	Intergenic	G	A	1.00	NA	NA
D7.1	2	897733	Synonymous	G	A	1.00	Thr831Thr	SEC24
	2	1255841	Missense	A	G	1.00	Leu1355Ser	FKS1
	2	1659448	Intergenic	G	A	1.00	NA	NA
	2	2198841	Missense	G	A	1.00	Glu386Lys	SYG1
D7.2	2	1255841	Missense	A	G	1.00	Leu1355Ser	FKS1
	2	1659448	Intergenic	G	A	1.00	NA	NA
D8.1	2	1255841	Missense	A	G	1.00	Leu1355Ser	FKS1
	2	1659448	Intergenic	G	A	1.00	NA	NA
D8.2	2	1255841	Missense	A	G	1.00	Leu1355Ser	FKS1
	2	1659448	Intergenic	G	A	1.00	NA	NA
D9.1	2	1659448	Intergenic	G	A	1.00	NA	NA
	6	252469	Missense	C	A	1.00	Gln308Lys	ERG3
D11.1	2	148547	Missense	G	T	1.00	Asp333Glu	SIP3
	2	1257850	Missense	C	A	1.00	Leu685Phe	FKS1
	3	1493626	Missense	C	T	0.98	Ala161Val	RPL8B
	5	985590	Missense	C	A	1.00	Asn181Lys	RLM1

^aNA, not applicable.