TABLE 1.
Proteins that coimmunoprecipitate with ClpC1EQ but not ClpC1WT
| UniProt accession no. | Gene name(s) | Protein description | Normalized avg scorea | Avg no. of PSMs |
|---|---|---|---|---|
| A0R461 | MSMEG_5715, MSMEI_5564 | Bac_luciferase domain-containing protein | 0.390 | 10.667 |
| A0QWT6 | MSMEG_3058, MSMEI_2982 | Lipoprotein | 0.144 | 3.000 |
| A0QSP8 | rplM, MSMEG_1556, MSMEI_1519 | 50S ribosomal protein L13 | 0.085 | 6.667 |
| A0QSD2 | rplD, MSMEG_1437, MSMEI_1401 | 50S ribosomal protein L4 | 0.048 | 5.000 |
| A0QRD2 | MSMEG_1073, MSMEI_1041 | Oxidoreductase, short-chain dehydrogenase/reductase family protein | 0.091 | 9.333 |
| A0R1Z9 | atpC, MSMEG_4935, MSMEI_4808 | ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit) | 0.060 | 3.000 |
| A0QVU2 | MSMEG_2695, MSMEI_2629 | 35-kDa protein | 0.083 | 2.500 |
| A0QWK5 | ppiB, MSMEG_2974, MSMEI_2900 | Peptidyl-prolyl cis-trans isomerase (PPIase) | 0.085 | 2.500 |
| A0QZ33 | MSMEG_3880, MSMEI_3790 | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase | 0.130 | 17.500 |
| A0R1H2 | MSMEG_4752 | Uncharacterized protein | 0.062 | 3.333 |
| A0R5K8 | MSMEG_6227, MSMEI_6066 | Transcriptional regulator, PadR family protein | 0.057 | 8.000 |
| A0R006 | wag31, ag84, MSMEG_4217, MSMEI_4119 | Cell wall synthesis protein Wag31 (antigen 84) | 0.075 | 5.667 |
| A0R2B0 | MSMEG_5048, MSMEI_4921 | Uncharacterized protein | 0.035 | 5.500 |
| A0QPX3 | MSMEG_0550, MSMEI_0535 | Sulfonate binding protein | 0.085 | 3.500 |
| A0QSG6 | rpsE, MSMEG_1472, MSMEI_1436 | 30S ribosomal protein S5 | 0.075 | 12.333 |
| A0R1B5 | MSMEG_4692, MSMEI_4575 | Uncharacterized protein MSMEG_4692/MSMEI_4575 | 0.082 | 4.500 |
| A0QTM5 | pcaD, MSMEG_1897, MSMEI_1857 | 3-Oxoadipate enol-lactonase (EC 3.1.1.24) | 0.102 | 4.500 |
| A0QU11 | MSMEG_2037, MSMEI_1991 | Bac_luciferase domain-containing protein | 0.030 | 3.000 |
| A0QS62 | rplJ, MSMEG_1364, MSMEI_1325 | 50S ribosomal protein L10 | 0.078 | 8.500 |
| A0QX20 | acnA, can, MSMEG_3143, MSMEI_3062 | Aconitate hydratase A (ACN) (aconitase) (EC 4.2.1.3) | 0.055 | 14.500 |
| A0QR90 | MSMEG_1029, MSMEG_2309 | Probable transcriptional regulatory protein | 0.095 | 7.500 |
| A0QT07 | sdhB, MSMEG_1669 | Succinate dehydrogenase, iron-sulfur protein (EC 1.3.99.1) | 0.059 | 6.500 |
| A0QS46 | rplA, MSMEG_1347, MSMEI_1309 | 50S ribosomal protein L1 | 0.053 | 12.000 |
| A0QZJ0 | MSMEG_4042, MSMEI_3947 | Transcriptional regulator, GntR family protein | 0.050 | 6.000 |
| A0QS97 | rpsG, MSMEG_1399, MSMEI_1361 | 30S ribosomal protein S7 | 0.082 | 14.500 |
| Q3L885 | pks, MSMEG_0408, MSMEI_0398 | Polyketide synthase (type I modular polyketide synthase) | 0.023 | 43.000 |
| A0QSG5 | rplR, MSMEG_1471, MSMEI_1435 | 50S ribosomal protein L18 | 0.032 | 6.500 |
| A0R616 | MSMEG_6391, MSMEI_6223 | Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) | 0.039 | 9.500 |
a
The normalized score is the percentage of the total ion score of a single run attributable to a given protein. Normalized scores were averaged across replicates.