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. 2023 Aug 17;19(8):e1011288. doi: 10.1371/journal.pcbi.1011288

Fig 5. Distortion in density-based visuals and analysis.

Fig 5

(a) Top row (left to right) displays UMAP embedding with n_neighbors = 5, embedding contour plot colored by condition, same contour with just in utero cells, same contour with just ex utero cells. Bottom row shows same plots for UMAP embedding with n_neighbors = 50. (b) Top row shows same plots for t-SNE embedding with perplexity of 5. Bottom row shows same plots for t-SNE embedding with perplexity of 50. Numbers denote comparisons between plots, dashed lines denote a difference, and solid lines denote the same appearance.