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. 2023 Aug 17;12:e80152. doi: 10.7554/eLife.80152

Table 6. Postsynaptic calcium dynamics parameters.

Note that the buffer concentration, calcium diffusion coefficient, calcium diffusion time constant and calcium permeability were considered free parameters to adjust the calcium dynamics.

Name Value Reference
Buffer and dye
Association buffer constant konBuff=247μM-1s-1 Bartol et al., 2015
Dissociation buffer constant koffBuff=524s-1 Bartol et al., 2015
Generic buffer concentration Buffcon=62μM 76.7μM (Bartol et al., 2015)
Calcium dynamics
Calcium baseline concentration Ca=0.05μM 0.037±0.005 to 0.054±0.005 μM
(Maravall et al., 2000)
Calcium decay time τCa=10-2s 0.05–0.5 s with dye (Maravall et al., 2000) therefore < 0.05–0.5 s undyed (unbuffered)
Calcium diffusion coefficient DCa=333.8μm2s-1 200 to 400 μm2s1 (Bartol et al., 2015; Holcman et al., 2005)
Calcium diffusion time constant τCaDiff=Volsp2DCa2Dneck+Lneck22DCa=5104 s 8 ms for a 
Volsp=0.7μm3 (Holcman et al., 2005)
GHK equation
Temperature T=35C converted to Kelvin in the Equation 14 given the protocol
Faraday constant F=96.485Cmol-1 Hille, 1978
Gas constant R=8.314JK-1mol-1 Hille, 1978
Calcium permeability PCa=45 μm s1 adjusted to produce 3μM Calcium in response to a Glu release supplementary file from Chang et al., 2017
Calcium ion valence zCa=2 Hille, 1978