Table 2.
Information on Hi-C and Micro-C data availability and pre-processing pipelines
| Dataset | Organism | Conditions & replicates used | Reference genome | Processing pipeline | Hi-C type | Availability |
|---|---|---|---|---|---|---|
| T-cells | Mouse | CD4SP: R1, R2 CD69negDP: R1, R2 | mm9 | HiC-Pro | .hic | GSE222211GSE199059 |
| High res T-cells | Mouse | CD69negDP: R3, R4 | mm9 | HiC-Pro | .hic | GSE199059 |
| NPCs | Mouse | auxin: R1, R2 control: R1, R2 | mm10 | .hic | GSE94452 | |
| Liver cells | Mouse | ΔNIPBL: R1, R2 tamoxifen: R1, R2 ΔNACPH2: R1, R2 | mm9 | Distiller | .mcool | GSE93431GSE122157 |
| Micro-C | Human | H1: R1, R2 HFF: R1, R3 | hg38 | Distiller | .mcool | 4DNESWST3UBH4DNES21D8SP84DNES2R6PUEK4DNESRJ8KV4Q |