Antibodies |
|
Rabbit anti-NLRP3 (for WB, IP) |
Cell Signaling Technology |
Cat# 15101; RRID: AB_2722591
|
Rabbit anti-NLRP3 (for IHC) |
Affinity Biosciences |
Cat# DF7438; RRID: AB_2839376
|
Mouse anti-NLRP3 (for IF) |
AdipoGen Life Sciences |
Cat# AG-20B-0014-C100; RRID: AB_2885199
|
Rabbit anti-ASC |
Cell Signaling Technology |
Cat# 67824; RRID: AB_2799736
|
Rabbit anti-Cleaved-IL-1β |
Cell Signaling Technology |
Cat# 63124; RRID: AB_2799639
|
Rabbit anti-IL-1β |
Cell Signaling Technology |
Cat# 31202; RRID: AB_2799001
|
Rabbit anti-Cleaved Caspase-1 |
Cell Signaling Technology |
Cat# 89332; RRID: AB_2923067
|
Rabbit anti-Caspase-1 |
Cell Signaling Technology |
Cat# 24232; RRID: AB_2890194
|
Rabbit anti-β-Actin |
Cell Signaling Technology |
Cat# 4970; RRID: AB_2223172
|
Rabbit anti-GAPDH |
Cell Signaling Technology |
Cat# 2118; RRID: AB_561053
|
Rabbit anti-p-p65 |
Abcam |
Cat# ab76302; RRID: AB_1524028
|
Rabbit anti-p65 |
Abcam |
Cat# ab32536; RRID: AB_776751
|
Rabbit anti-p-ERK |
Abcam |
Cat# ab201015; RRID: AB_2934088
|
Rabbit anti-ERK |
Abcam |
Cat# ab184699; RRID: AB_2802136
|
Rabbit anti-p-AKT |
Cell Signaling Technology |
Cat# 4060; RRID: AB_2315049
|
Mouse anti-AKT |
Proteintech |
Cat# 60203-2-Ig; RRID: AB_10912803
|
Rabbit anti-p-p38 |
Abcam |
Cat# ab195049; RRID: AB_2576214
|
Rabbit anti-p38 |
Abcam |
Cat# ab170099 |
Rabbit anti-PPT1 |
Proteintech |
Cat# 29653-1-AP; RRID: AB_2923599
|
Rabbit anti-FLAG |
Abcam |
Cat# ab205606; RRID: AB_2916341
|
Rabbit anti-M6PR |
Abcam |
Cat# ab124767; RRID: AB_10974087
|
Rabbit anti-PSAP |
Abcam |
Cat# ab300469 |
Rabbit anti-HSC70 |
Proteintech |
Cat# 10654-1-AP; RRID: AB_2120153
|
Rabbit anti-CD36 |
Abcam |
Cat# ab252923 |
Rabbit anti-LRP1 |
Abcam |
Cat# ab92544; RRID: AB_2234877
|
Rabbit anti-Ki-67 |
Abcam |
Cat# ab15580; RRID: AB_443209
|
Rabbit anti-α-SMA |
Proteintech |
Cat# 14395-1-AP; RRID: AB_2223009
|
Rabbit anti-CD31 |
Proteintech |
Cat# 11265-1-AP; RRID: AB_2299349
|
Rabbit anti-Mrc1 |
Servicebio |
Cat# GB113497
|
Rabbit anti-F4/80 |
Servicebio |
Cat# GB11027; RRID: AB_2814687
|
Rabbit anti-Nos |
Cell Signaling Technology |
Cat# 13120; RRID: AB_2687529
|
Rabbit anti-CD206 |
Cell Signaling Technology |
Cat# 24595; RRID: AB_2892682
|
Cholera Toxin Subunit B |
Thermo Fisher Scientific |
Cat# C22843
|
Rat anti-mouse LAMP2 |
Proteintech |
Cat# 65052-1-Ig; RRID: AB_2881468
|
LysoTracker red |
Beyotime |
Cat# C1046 |
LysoSensor™ Green DND-189 |
Yeasen |
Cat# 40767ES50 |
APC anti-mouse CD86 |
Biolegend |
Cat# 105012; RRID: AB_493342
|
PE anti-mouse CD163 |
Biolegend |
Cat# 156703; RRID: AB_2860724
|
Brilliant Violet 421™ anti-mouse F4/80 |
Biolegend |
Cat# 123137; RRID: AB_2563102
|
APC anti-mouse/human CD11b |
Biolegend |
Cat# 101212; RRID: AB_312795
|
APC anti-mouse CD36 |
Biolegend |
Cat# 102611; RRID: AB_571994
|
TruStain FcX™ (anti-mouse CD16/32) |
Biolegend |
Cat# 101319; RRID: AB_1574973
|
ABflo™ 555-conjugated Goat Anti-Mouse IgG (H + L) |
Abclonal |
Cat# AS057; RRID: AB_2768321
|
Alexa Fluor 647-conjugated Goat Anti-Rabbit IgG (H + L) |
Abclonal |
Cat# AS060; RRID: AB_2768330
|
Fluorescein (FITC)–conjugated Goat Anti-Rat IgG(H + L) |
Proteintech |
Cat# SA00003-11; RRID: AB_2890989
|
|
Biological samples |
|
Human nondiabetic wound tissue samples |
the First Affiliated Hospital of Sun Yat-sen University |
N/A |
Human diabetic wound tissue samples |
the First Affiliated Hospital of Sun Yat-sen University |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
LPS |
Sigma Aldrich |
Cat# L2880 |
Recombinant Murine IL-4 |
Peprotech |
Cat# 214-14 |
Phenylpyruvate |
Sigma Aldrich |
Cat# 286958 |
Phenylalanine |
MedChemExpress |
Cat# HY-N0215 |
Lipofectamine 2000 Transfection Reagent |
Invitrogen |
Cat# 11668019 |
Lipofectamine RNAi Max Transfection Reagent |
Invitrogen |
Cat# 13778030 |
Penicillin‒streptomycin |
Sigma Aldrich |
Cat# V900929 |
Fetal bovine serum |
ThermoFisher Scientific |
Cat# 10099-141 |
MCC950 |
Selleck |
Cat# S8930 |
ATP |
Selleck |
Cat# S5260 |
Recombinant M-CSF |
PeproTech |
Cat# 315-02 |
Red cell lysis buffer |
Beyotime |
Cat# C3702 |
Palmitic acid |
MedChemExpress |
Cat# HY-N0830 |
DMEM |
ThermoFisher Scientific |
Cat# C11995500BT |
DL-dithiothreitol |
MedChemExpress |
Cat# HY-15917 |
4-methylumbelliferyl-6-thio-βd-gluco-pyranoside |
Medbio |
Cat# MED20989 |
β-glucosidase |
Sigma Aldrich |
Cat# G4511 |
|
Critical commercial assays |
|
IP-ABE Palmitoylation Kit |
AIMS |
Cat# AM101314
|
HiScript 1st Strand cDNA Synthesis Kit |
Vazyme, China |
Cat# R111 |
Real-time Fluorescent Quantitative PCR Kit |
Vazyme, China |
Cat# Q321 |
ECL detection reagent |
EpiZyme |
Cat# SQ202 |
BCA assay kit |
Thermo Fisher Scientific |
Cat# 23225 |
IL-1β ELISA KIT |
MEIMIAN |
Cat# MM-0040M2 |
IL-18 ELISA KIT |
MEIMIAN |
Cat# MM-0169M2 |
TNF-α ELISA KIT |
MEIMIAN |
Cat# MM-0132M2 |
|
Deposited data |
|
LC-MS raw data files |
https://www.ebi.ac.uk/metabolights/ |
MTBLS7853 |
See Table S3 for LiP-SMap determination of PPA-bound proteins |
This paper |
N/A |
|
Experimental models: Cell lines |
|
Murine BMDM |
This paper |
N/A |
Mouse embryonic fibroblasts |
This paper |
N/A |
|
Experimental models: Organisms/strains |
|
C57BL/6J mice |
GemPharmatech |
N/A |
BKS-DB mice |
GemPharmatech |
N/A |
|
Oligonucleotides |
|
Primers for qRT-PCR, see Table S4
|
Ruibiotech |
N/A |
siRNA, see Table S5
|
GenePharma |
N/A |
|
Recombinant DNA |
|
pIRES2-Flag-Ppt1 |
Umine Biotechnology |
N/A |
pIRES2-Flag-Ppt1-MUT |
Umine Biotechnology |
N/A |
|
Software and algorithms |
|
FlowJo software Version 10.8.1 |
BD Biosciences |
https://www.flowjo.com/ |
ImageJ |
National Institutes of Health (NIH) |
https://imagej.nih.gov/ij/ |
GraphPad Prism 8 |
GraphPad Software |
https://www.graphpad.com/scientificsoftware/prism/ |
Autodock |
Autodock Software |
https://autodock.scripps.edu/ |
Adobe Illustrator |
Adobe |
https://www.adobe.com/ |
|
Other |
|
Phenylalanine diets, see Table S2
|
This paper |
N/A |