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. 2023 Jul 21;4(8):101129. doi: 10.1016/j.xcrm.2023.101129
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit anti-NLRP3 (for WB, IP) Cell Signaling Technology Cat# 15101; RRID: AB_2722591
Rabbit anti-NLRP3 (for IHC) Affinity Biosciences Cat# DF7438; RRID: AB_2839376
Mouse anti-NLRP3 (for IF) AdipoGen Life Sciences Cat# AG-20B-0014-C100; RRID: AB_2885199
Rabbit anti-ASC Cell Signaling Technology Cat# 67824; RRID: AB_2799736
Rabbit anti-Cleaved-IL-1β Cell Signaling Technology Cat# 63124; RRID: AB_2799639
Rabbit anti-IL-1β Cell Signaling Technology Cat# 31202; RRID: AB_2799001
Rabbit anti-Cleaved Caspase-1 Cell Signaling Technology Cat# 89332; RRID: AB_2923067
Rabbit anti-Caspase-1 Cell Signaling Technology Cat# 24232; RRID: AB_2890194
Rabbit anti-β-Actin Cell Signaling Technology Cat# 4970; RRID: AB_2223172
Rabbit anti-GAPDH Cell Signaling Technology Cat# 2118; RRID: AB_561053
Rabbit anti-p-p65 Abcam Cat# ab76302; RRID: AB_1524028
Rabbit anti-p65 Abcam Cat# ab32536; RRID: AB_776751
Rabbit anti-p-ERK Abcam Cat# ab201015; RRID: AB_2934088
Rabbit anti-ERK Abcam Cat# ab184699; RRID: AB_2802136
Rabbit anti-p-AKT Cell Signaling Technology Cat# 4060; RRID: AB_2315049
Mouse anti-AKT Proteintech Cat# 60203-2-Ig; RRID: AB_10912803
Rabbit anti-p-p38 Abcam Cat# ab195049; RRID: AB_2576214
Rabbit anti-p38 Abcam Cat# ab170099
Rabbit anti-PPT1 Proteintech Cat# 29653-1-AP; RRID: AB_2923599
Rabbit anti-FLAG Abcam Cat# ab205606; RRID: AB_2916341
Rabbit anti-M6PR Abcam Cat# ab124767; RRID: AB_10974087
Rabbit anti-PSAP Abcam Cat# ab300469
Rabbit anti-HSC70 Proteintech Cat# 10654-1-AP; RRID: AB_2120153
Rabbit anti-CD36 Abcam Cat# ab252923
Rabbit anti-LRP1 Abcam Cat# ab92544; RRID: AB_2234877
Rabbit anti-Ki-67 Abcam Cat# ab15580; RRID: AB_443209
Rabbit anti-α-SMA Proteintech Cat# 14395-1-AP; RRID: AB_2223009
Rabbit anti-CD31 Proteintech Cat# 11265-1-AP; RRID: AB_2299349
Rabbit anti-Mrc1 Servicebio Cat# GB113497
Rabbit anti-F4/80 Servicebio Cat# GB11027; RRID: AB_2814687
Rabbit anti-Nos Cell Signaling Technology Cat# 13120; RRID: AB_2687529
Rabbit anti-CD206 Cell Signaling Technology Cat# 24595; RRID: AB_2892682
Cholera Toxin Subunit B Thermo Fisher Scientific Cat# C22843
Rat anti-mouse LAMP2 Proteintech Cat# 65052-1-Ig; RRID: AB_2881468
LysoTracker red Beyotime Cat# C1046
LysoSensor™ Green DND-189 Yeasen Cat# 40767ES50
APC anti-mouse CD86 Biolegend Cat# 105012; RRID: AB_493342
PE anti-mouse CD163 Biolegend Cat# 156703; RRID: AB_2860724
Brilliant Violet 421™ anti-mouse F4/80 Biolegend Cat# 123137; RRID: AB_2563102
APC anti-mouse/human CD11b Biolegend Cat# 101212; RRID: AB_312795
APC anti-mouse CD36 Biolegend Cat# 102611; RRID: AB_571994
TruStain FcX™ (anti-mouse CD16/32) Biolegend Cat# 101319; RRID: AB_1574973
ABflo™ 555-conjugated Goat Anti-Mouse IgG (H + L) Abclonal Cat# AS057; RRID: AB_2768321
Alexa Fluor 647-conjugated Goat Anti-Rabbit IgG (H + L) Abclonal Cat# AS060; RRID: AB_2768330
Fluorescein (FITC)–conjugated Goat Anti-Rat IgG(H + L) Proteintech Cat# SA00003-11; RRID: AB_2890989

Biological samples

Human nondiabetic wound tissue samples the First Affiliated Hospital of Sun Yat-sen University N/A
Human diabetic wound tissue samples the First Affiliated Hospital of Sun Yat-sen University N/A

Chemicals, peptides, and recombinant proteins

LPS Sigma Aldrich Cat# L2880
Recombinant Murine IL-4 Peprotech Cat# 214-14
Phenylpyruvate Sigma Aldrich Cat# 286958
Phenylalanine MedChemExpress Cat# HY-N0215
Lipofectamine 2000 Transfection Reagent Invitrogen Cat# 11668019
Lipofectamine RNAi Max Transfection Reagent Invitrogen Cat# 13778030
Penicillin‒streptomycin Sigma Aldrich Cat# V900929
Fetal bovine serum ThermoFisher Scientific Cat# 10099-141
MCC950 Selleck Cat# S8930
ATP Selleck Cat# S5260
Recombinant M-CSF PeproTech Cat# 315-02
Red cell lysis buffer Beyotime Cat# C3702
Palmitic acid MedChemExpress Cat# HY-N0830
DMEM ThermoFisher Scientific Cat# C11995500BT
DL-dithiothreitol MedChemExpress Cat# HY-15917
4-methylumbelliferyl-6-thio-βd-gluco-pyranoside Medbio Cat# MED20989
β-glucosidase Sigma Aldrich Cat# G4511

Critical commercial assays

IP-ABE Palmitoylation Kit AIMS Cat# AM101314
HiScript 1st Strand cDNA Synthesis Kit Vazyme, China Cat# R111
Real-time Fluorescent Quantitative PCR Kit Vazyme, China Cat# Q321
ECL detection reagent EpiZyme Cat# SQ202
BCA assay kit Thermo Fisher Scientific Cat# 23225
IL-1β ELISA KIT MEIMIAN Cat# MM-0040M2
IL-18 ELISA KIT MEIMIAN Cat# MM-0169M2
TNF-α ELISA KIT MEIMIAN Cat# MM-0132M2

Deposited data

LC-MS raw data files https://www.ebi.ac.uk/metabolights/ MTBLS7853
See Table S3 for LiP-SMap determination of PPA-bound proteins This paper N/A

Experimental models: Cell lines

Murine BMDM This paper N/A
Mouse embryonic fibroblasts This paper N/A

Experimental models: Organisms/strains

C57BL/6J mice GemPharmatech N/A
BKS-DB mice GemPharmatech N/A

Oligonucleotides

Primers for qRT-PCR, see Table S4 Ruibiotech N/A
siRNA, see Table S5 GenePharma N/A

Recombinant DNA

pIRES2-Flag-Ppt1 Umine Biotechnology N/A
pIRES2-Flag-Ppt1-MUT Umine Biotechnology N/A

Software and algorithms

FlowJo software Version 10.8.1 BD Biosciences https://www.flowjo.com/
ImageJ National Institutes of Health (NIH) https://imagej.nih.gov/ij/
GraphPad Prism 8 GraphPad Software https://www.graphpad.com/scientificsoftware/prism/
Autodock Autodock Software https://autodock.scripps.edu/
Adobe Illustrator Adobe https://www.adobe.com/

Other

Phenylalanine diets, see Table S2 This paper N/A