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. 2023 Aug 8;4(8):101142. doi: 10.1016/j.xcrm.2023.101142
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

EGFR, Rabbit monoclonal Cell Signaling Technology Cat#4267; RRID:AB_2246311
pEGFR (Y1068), Rabbit polyclonal Cell Signaling Technology Cat#2234; RRID:AB_331701
HER2, Rabbit monoclonal Cell Signaling Technology Cat#4290; RRID:AB_10557104
pHER2 (Y1221/1222), Rabbit polyclonal Cell Signaling Technology Cat#2249; RRID:AB_2099241
HER3, Rabbit monoclonal Cell Signaling Technology Cat#12708; RRID:AB_2721919
pHER3(Y1289), Rabbit monoclonal Cell Signaling Technology Cat#4791; RRID:AB_2099709
IGF1Rβ, Rabbit monoclonal Cell Signaling Technology Cat#9750; RRID:AB_10950969
AXL, Rabbit monoclonal Cell Signaling Technology Cat#8661; RRID:AB_11217435
MET, Rabbit monoclonal Cell Signaling Technology Cat#8198; RRID:AB_10858224
ERK1/2, Rabbit monoclonal Cell Signaling Technology Cat#4695; RRID:AB_390779
pERK1/2 (Y202/204), Rabbit polyclonal Cell Signaling Technology Cat#9101; RRID:AB_331646
AKT1, Rabbit monoclonal Cell Signaling Technology Cat#2938; RRID:AB_915788
pAKT (S473), Rabbit monoclonal Cell Signaling Technology Cat#4060; RRID:AB_2315049
Caspase 3, Rabbit polyclonal Cell Signaling Technology Cat#9662; RRID:AB_331439
Cleaved Caspase 3 (D175), Rabbit polyclonal Cell Signaling Technology Cat#9661; RRID:AB_2341188
BIM, Rabbit monoclonal Cell Signaling Technology Cat#2933; RRID:AB_1030947
Survivin, Rabbit polyclonal Cell Signaling Technology Cat#2803; RRID:AB_490807
p27, Rabbit monoclonal Cell Signaling Technology Cat#3686; RRID:AB_2077850
γH2AX (S139), Rabbit Cell Signaling Technology Cat#2577; RRID:AB_2118010
AURKA, Rabbit monoclonal Cell Signaling Technology Cat#4718; RRID:AB_2061482
FOXM1, Rabbit monoclonal Cell Signaling Technology Cat#5436; RRID:AB_10692483
Cyclin B1, Rabbit monoclonal Cell Signaling Technology Cat#12231; RRID:AB_2783553
RAD18, Rabbit monoclonal Cell Signaling Technology Cat#9040; RRID:AB_2756446
GAS6, Rabbit monoclonal Cell Signaling Technology Cat#67202; RRID:AB_2799720
RAD51, Rabbit monoclonal Cell Signaling Technology Cat#8875; RRID:AB_2721109
Ub1-PCNA (K164), Rabbit monoclonal Cell Signaling Technology Cat#13439; RRID:AB_2798219
PCNA, Mouse monoclonal Cell Signaling Technology Cat#2586; RRID:AB_2160343
FOXO3A, Rabbit monoclonal Cell Signaling Technology Cat#2497; RRID:AB_836876
KI67, Mouse monoclonal Cell Signaling Technology Cat#9449; RRID:AB_2797703
β-Actin, Rabbit polyclonal Cell Signaling Technology Cat#4967; RRID:AB_330288
GAPDH, Mouse monoclonal Millipore Cat#MAB374; RRID:AB_2107445
Vinculin, Mouse monoclonal Sigma-Aldrich Cat#V9264; RRID:AB_10603627
Pol η, Rabbit polyclonal Abcam Cat#ab234855
Pol κ, Rabbit polyclonal Abcam Cat#ab86076; RRID:AB_1925334
MLH1, Rabbit monoclonal Abcam Cat#ab92312; RRID:AB_2049968
MSH2, Rabbit monoclonal Abcam Cat#ab92473; RRID:AB_10585291
KIF4A, Rabbit polyclonal Aviva Systems Biology Cat#OAGA05174; RRID:AB_2861368
BRCA1, Rabbit polyclonal Santa Cruz Biotechnology Cat#sc-642; RRID:AB_630944
Anti-mouse Alexa Fluor 555-conjugated secondary antibody Thermo Fisher Scientific Cat#A-31570; RRID:AB_2536180
Anti-rabbit Alexa Fluor 555-conjugated secondary antibody Thermo Fisher Scientific Cat#A-31572; RRID:AB_162543

Biological samples

Patient derived xenograft (PDX) TM00199 The Jackson Laboratory TM00199
Patient derived xenograft (PDX) TM00193 The Jackson Laboratory TM00193
Patient derived xenograft (PDX) TM00253 The Jackson Laboratory TM00253

Chemicals, peptides, and recombinant proteins

Erlotinib LC Laboratories Cat#E−4997
Osimertinib Gift from Astrazeneca N/A
Cetuximab (Erbitux®) Merck N/A
Trastuzumab (Herceptin®) Roche N/A
Panitumumab (Vectibix®) Amgen N/A
mAb565 Generated in our lab19 N/A
mAb111 Generated in our lab19 N/A
NAC (N-acetyl-L-cysteine) Sigma-Aldrich Cat# A9165; CAS:
616-91-1
DHE (Dihydroethidium) Thermo Fisher Scientific Cat# D11347
DCFDA (2ʹ,7ʹ-Dichlorofluorescin Diacetate) Thermo Fisher Scientific Cat#D399
Triton X-100 Sigma-Aldrich Cat#T8787; CAS:
9036-19-5
MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) Sigma-Aldrich Cat#M5655; CAS: 298-93-1
FITC-labeled phalloidin Sigma-Aldrich Cat#P5282

Critical commercial assays

FuGENE HD Transfection Reagent Promega Cat#E2311

Experimental models: Cell lines

H3255 National Cancer Institute (NCI) RRID:CVCL_6831
11–18 Riken BRC RRID:CVCL_6659
PC9 Gift from Julian Downward, Francis Crick Institute, London RRID:CVCL_B260
PC9ER Gift from Julian Downward, Francis Crick Institute, London N/A
HCC4006 ATCC Cat# CRL-2871; RRID:CVCL_1269
HCC2935 ATCC Cat# CRL-2869; RRID:CVCL_1265
HCC827 Gift from Ravid Straussman, Weizmann Institute of Science, Israel RRID:CVCL_2063
H1975 ATCC Cat# CRL-5908; RRID:CVCL_1511
HEK293T ATCC Cat# CRL-3216; RRID:CVCL_0063

Experimental models: Organisms/strains

CD1 nude mice (HsdHli:CD1-Foxn1nu) Envigo Israel N/A
NSG mice The Jackson Laboratory RRID:IMSR_JAX:005557

Recombinant DNA

Fucci(CA)2/pCSII-EF RIKEN BRC RDB15446
psPAX2 Addgene Plasmid #12260
pMD2.G Addgene Plasmid #12259

Software and algorithms

GraphPad Prism v8.0.2 GraphPad Software RRID:SCR_002798
ImageJ v1.53t National Institute of Health (NIH) RRID:SCR_003070
Cell Profiler v4.2.1 Broad Institute RRID:SCR_007358
Image Lab v6.0.1 Bio-Rad RRID:SCR_014210
ReViSP v2.3 Piccinini et al.60
Piccinini et al.61
N/A
IncuCyte S3 software Sartorius RRID:SCR_023147
R v4.2.1 The R Foundation RRID:SCR_001905