REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
EGFR, Rabbit monoclonal | Cell Signaling Technology | Cat#4267; RRID:AB_2246311 |
pEGFR (Y1068), Rabbit polyclonal | Cell Signaling Technology | Cat#2234; RRID:AB_331701 |
HER2, Rabbit monoclonal | Cell Signaling Technology | Cat#4290; RRID:AB_10557104 |
pHER2 (Y1221/1222), Rabbit polyclonal | Cell Signaling Technology | Cat#2249; RRID:AB_2099241 |
HER3, Rabbit monoclonal | Cell Signaling Technology | Cat#12708; RRID:AB_2721919 |
pHER3(Y1289), Rabbit monoclonal | Cell Signaling Technology | Cat#4791; RRID:AB_2099709 |
IGF1Rβ, Rabbit monoclonal | Cell Signaling Technology | Cat#9750; RRID:AB_10950969 |
AXL, Rabbit monoclonal | Cell Signaling Technology | Cat#8661; RRID:AB_11217435 |
MET, Rabbit monoclonal | Cell Signaling Technology | Cat#8198; RRID:AB_10858224 |
ERK1/2, Rabbit monoclonal | Cell Signaling Technology | Cat#4695; RRID:AB_390779 |
pERK1/2 (Y202/204), Rabbit polyclonal | Cell Signaling Technology | Cat#9101; RRID:AB_331646 |
AKT1, Rabbit monoclonal | Cell Signaling Technology | Cat#2938; RRID:AB_915788 |
pAKT (S473), Rabbit monoclonal | Cell Signaling Technology | Cat#4060; RRID:AB_2315049 |
Caspase 3, Rabbit polyclonal | Cell Signaling Technology | Cat#9662; RRID:AB_331439 |
Cleaved Caspase 3 (D175), Rabbit polyclonal | Cell Signaling Technology | Cat#9661; RRID:AB_2341188 |
BIM, Rabbit monoclonal | Cell Signaling Technology | Cat#2933; RRID:AB_1030947 |
Survivin, Rabbit polyclonal | Cell Signaling Technology | Cat#2803; RRID:AB_490807 |
p27, Rabbit monoclonal | Cell Signaling Technology | Cat#3686; RRID:AB_2077850 |
γH2AX (S139), Rabbit | Cell Signaling Technology | Cat#2577; RRID:AB_2118010 |
AURKA, Rabbit monoclonal | Cell Signaling Technology | Cat#4718; RRID:AB_2061482 |
FOXM1, Rabbit monoclonal | Cell Signaling Technology | Cat#5436; RRID:AB_10692483 |
Cyclin B1, Rabbit monoclonal | Cell Signaling Technology | Cat#12231; RRID:AB_2783553 |
RAD18, Rabbit monoclonal | Cell Signaling Technology | Cat#9040; RRID:AB_2756446 |
GAS6, Rabbit monoclonal | Cell Signaling Technology | Cat#67202; RRID:AB_2799720 |
RAD51, Rabbit monoclonal | Cell Signaling Technology | Cat#8875; RRID:AB_2721109 |
Ub1-PCNA (K164), Rabbit monoclonal | Cell Signaling Technology | Cat#13439; RRID:AB_2798219 |
PCNA, Mouse monoclonal | Cell Signaling Technology | Cat#2586; RRID:AB_2160343 |
FOXO3A, Rabbit monoclonal | Cell Signaling Technology | Cat#2497; RRID:AB_836876 |
KI67, Mouse monoclonal | Cell Signaling Technology | Cat#9449; RRID:AB_2797703 |
β-Actin, Rabbit polyclonal | Cell Signaling Technology | Cat#4967; RRID:AB_330288 |
GAPDH, Mouse monoclonal | Millipore | Cat#MAB374; RRID:AB_2107445 |
Vinculin, Mouse monoclonal | Sigma-Aldrich | Cat#V9264; RRID:AB_10603627 |
Pol η, Rabbit polyclonal | Abcam | Cat#ab234855 |
Pol κ, Rabbit polyclonal | Abcam | Cat#ab86076; RRID:AB_1925334 |
MLH1, Rabbit monoclonal | Abcam | Cat#ab92312; RRID:AB_2049968 |
MSH2, Rabbit monoclonal | Abcam | Cat#ab92473; RRID:AB_10585291 |
KIF4A, Rabbit polyclonal | Aviva Systems Biology | Cat#OAGA05174; RRID:AB_2861368 |
BRCA1, Rabbit polyclonal | Santa Cruz Biotechnology | Cat#sc-642; RRID:AB_630944 |
Anti-mouse Alexa Fluor 555-conjugated secondary antibody | Thermo Fisher Scientific | Cat#A-31570; RRID:AB_2536180 |
Anti-rabbit Alexa Fluor 555-conjugated secondary antibody | Thermo Fisher Scientific | Cat#A-31572; RRID:AB_162543 |
Biological samples | ||
Patient derived xenograft (PDX) TM00199 | The Jackson Laboratory | TM00199 |
Patient derived xenograft (PDX) TM00193 | The Jackson Laboratory | TM00193 |
Patient derived xenograft (PDX) TM00253 | The Jackson Laboratory | TM00253 |
Chemicals, peptides, and recombinant proteins | ||
Erlotinib | LC Laboratories | Cat#E−4997 |
Osimertinib | Gift from Astrazeneca | N/A |
Cetuximab (Erbitux®) | Merck | N/A |
Trastuzumab (Herceptin®) | Roche | N/A |
Panitumumab (Vectibix®) | Amgen | N/A |
mAb565 | Generated in our lab19 | N/A |
mAb111 | Generated in our lab19 | N/A |
NAC (N-acetyl-L-cysteine) | Sigma-Aldrich | Cat# A9165; CAS: 616-91-1 |
DHE (Dihydroethidium) | Thermo Fisher Scientific | Cat# D11347 |
DCFDA (2ʹ,7ʹ-Dichlorofluorescin Diacetate) | Thermo Fisher Scientific | Cat#D399 |
Triton X-100 | Sigma-Aldrich | Cat#T8787; CAS: 9036-19-5 |
MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) | Sigma-Aldrich | Cat#M5655; CAS: 298-93-1 |
FITC-labeled phalloidin | Sigma-Aldrich | Cat#P5282 |
Critical commercial assays | ||
FuGENE HD Transfection Reagent | Promega | Cat#E2311 |
Experimental models: Cell lines | ||
H3255 | National Cancer Institute (NCI) | RRID:CVCL_6831 |
11–18 | Riken BRC | RRID:CVCL_6659 |
PC9 | Gift from Julian Downward, Francis Crick Institute, London | RRID:CVCL_B260 |
PC9ER | Gift from Julian Downward, Francis Crick Institute, London | N/A |
HCC4006 | ATCC | Cat# CRL-2871; RRID:CVCL_1269 |
HCC2935 | ATCC | Cat# CRL-2869; RRID:CVCL_1265 |
HCC827 | Gift from Ravid Straussman, Weizmann Institute of Science, Israel | RRID:CVCL_2063 |
H1975 | ATCC | Cat# CRL-5908; RRID:CVCL_1511 |
HEK293T | ATCC | Cat# CRL-3216; RRID:CVCL_0063 |
Experimental models: Organisms/strains | ||
CD1 nude mice (HsdHli:CD1-Foxn1nu) | Envigo Israel | N/A |
NSG mice | The Jackson Laboratory | RRID:IMSR_JAX:005557 |
Recombinant DNA | ||
Fucci(CA)2/pCSII-EF | RIKEN BRC | RDB15446 |
psPAX2 | Addgene | Plasmid #12260 |
pMD2.G | Addgene | Plasmid #12259 |
Software and algorithms | ||
GraphPad Prism v8.0.2 | GraphPad Software | RRID:SCR_002798 |
ImageJ v1.53t | National Institute of Health (NIH) | RRID:SCR_003070 |
Cell Profiler v4.2.1 | Broad Institute | RRID:SCR_007358 |
Image Lab v6.0.1 | Bio-Rad | RRID:SCR_014210 |
ReViSP v2.3 | Piccinini et al.60 Piccinini et al.61 |
N/A |
IncuCyte S3 software | Sartorius | RRID:SCR_023147 |
R v4.2.1 | The R Foundation | RRID:SCR_001905 |