Table 2.
BOT-A2 promoter table with DE number
| Promoter name | Gene annotation | Simplified strain names | Glucose | Xylose | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Countsnorm t1 | Countsnorm t2 | Log2 FC t2 vs t1 | p-value t2 vs t1 | Countsnorm t1 | Countsnorm t2 | Log2 FC t2 vs t1 | p-value t2 vs t1 | |||
| 3877 | Nitrate transporter | UP1a–UP1e | 5.8 ± 0.6 | 1963.6 ± 161.6 | 8.4 | 0 | 3.5 ± 0.4 | 619.3 ± 9.9 | 7.7 | 0 |
| 4847 | Alcohol oxidase Fao1p | UP2a–UP2e | 32.4 ± 3.0 | 608.1 ± 91.7 | 4.2 | 9.5e-83 | 14.9 ± 3.5 | 281.5 ± 44.1 | 4.5 | 1.6e-89 |
| 0480 | Carboxypeptidase Y inhibitor Tfs1p | UP3a–UP3e | 8.0 ± 2.6 | 310.4 ± 14.4 | 5.3 | 2.5e-75 | 80.1 ± 12.8 | 444.4 ± 22.3 | 2.7 | 4.1e-22 |
| 2184 | Protein yippee-like Moh1p | UP4a–UP4e | 36.9 ± 2.8 | 547.3 ± 112.0 | 3.9 | 5.3e-49 | 70.4 ± 13.1 | 830.9 ± 143.4 | 3.8 | 5.0e-47 |
| 6908 | Autophagy-related protein | UP5a–UP5e | 281.2 ± 95.5 | 2580.8 ± 215.5 | 3.2 | 5.4e-25 | 780.5 ± 159.9 | 4270.3 ± 697.5 | 2.7 | 3.5e-18 |
| 2391 | Alcohol dehydrogenase | UP6a–UP6e | 14.9 ± 2.7 | 282.8 ± 27.7 | 4.2 | 1.1e-55 | 23.2 ± 5.6 | 386.8 ± 47.8 | 4.3 | 2.5e-57 |
| 6709 | Fatty acid elongation protein | UP7a–UP7e | 182.2 ± 78.5 | 1227.2 ± 83.6 | 2.7 | 4.6e-19 | 89.4 ± 18.1 | 1371.3 ± 24.1 | 4.2 | 1.4e-42 |
| 0568 | Protein Orm1p | UP8a–UP8e | 42.8 ± 9.6 | 282.1 ± 11.6 | 2.7 | 8.8e-23 | 65.9 ± 16.8 | 335.7 ± 14.3 | 2.6 | 9.8e-21 |
| 5111 | Dehydrogenase/reductase | UP9a-UP9e | 75.9 ± 11.3 | 463.6 ± 35.7 | 2.6 | 4.7e-24 | 14.9 ± 2.9 | 442.8 ± 90.8 | 5.1 | 8.7e-88 |
| 0530 | Ribosome-associated molecular chaperone Ssb2p | DN1a–DN1e | 297.1 ± 29.8 | 6.0 ± 0.8 | -5.6 | 1.6e-57 | 185.9 ± 80.3 | 3.6 ± 1.4 | -5.4 | 3.0e-51 |
| 3356 | Diphosphomevalonate decarboxylase Mvd1p | DN2a–DN2e | 25.1 ± 1.9 | 0.7 ± 0.2 | -5.2 | 9.9e-50 | 21.2 ± 4.9 | 0.4 ± 0.3 | -5.4 | 1.3e-38 |
| 5449 | Epsin-3 Ent3p | DN3a–DN3e | 9.5 ± 0.6 | 0.6 ± 0.1 | -4.1 | 2.8e-13 | 7.4 ± 2.8 | 0.8 ± 0.7 | -3.0 | 8.6e-8 |
| 4071 | APC/C activator protein Cdc20p | DN4a–DN4e | 19.3 ± 5.0 | 1.6 ± 0.3 | -3.6 | 4.1e-19 | 17.3 ± 8.3 | 2.2 ± 0.3 | -2.7 | 1.6e-11 |
| 5360 | 2-oxoglutarate dehydrogenase (mitoch.) Kgd1p | DN5a–DN5e | 102.5 ± 18.3 | 9.4 ± 0.7 | -3.5 | 1.8e-42 | 39.4 ± 5.0 | 6.0 ± 1.7 | -2.5 | 1.3e-21 |
| 5958 | Mitochondrial inner membrane protein Oxa1p | DN6a–DN6e | 67.0 ± 7.5 | 3.9 ± 0.8 | -4.1 | 5.5e-48 | 33.9 ± 6.7 | 1.3 ± 0.5 | -4.4 | 5.94e-50 |
Promoters are named after four last digits of the locus tags of the genes they precede. Countsnorm are the average normalized counts from three biological replicates, normalized using the geTMM method [117]. The promoter from MEP2 (RHTO_01680) in strain NP11 was also evaluated (strains UP10a-UP10e)