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[Preprint]. 2023 Aug 15:2023.08.10.552841. [Version 2] doi: 10.1101/2023.08.10.552841
pBud-C. elegans XBP-1 cloning
xbp-1 Forward: 5’- CTGAGGTACC ATGAGCAACTATCCAAAACG-3’
Reverse: 5’- GTACAGATCTTTAATTTTGGAAGAAATTTAGGTC-3’
cloning IRE1 chimera with C. elegans linker or with human linker
C. elegans IRE1 cytosolic domains Forward: 5’- TCTGTACAAGCAATGTGGAAGACAATGGGATCAAC-3’
Reverse: 5’-GGATGAGTACCCGAGGTTAACAC-3’
Forward 2: 5’-GTGTTAACCTCGGGTACTCATCC-3’
Reverse 2: 5’-ATACAGAATTCTTAATCGGTGTTCGGATTTGATTTC-3’
human IRE1 linker Forward: 5’-TCTGTACAAGACTAGTCAGCTGC-3’
Reverse: 5’-GATCTAGAGGAAATTTTCCCAACTATCACC-3’
C. elegans kinase domain Forward: 5’-AGTCTAGATATAGTCCATCAGATATTCTTGGAAC-3’
pTight-DAF-7-mCherry cloning
human IGF2 signal peptide Forward: 5’-TTAGCGGCCGCATGGGAATCCCAATGGGGAAGTCGATGC-3’
Reverse: 5’-TATAGGTACCAGCAATGCAGCACGAGGCGAAGG-3’
mCherry Forward: 5’-TCATGGTACCGTGAGCAAGGGCGAGGAGGATAAC −3’
Reverse: 5’-TACTAGATCTTCCTTGTACAGCTCGTCCATGCC-3’
DAF-7 propeptide Forward: 5’-CATGTGTACAAGAACTGCACCAACTCAGGTGTTTG-3’
Reverse: 5’-TACTAGATCTTCTGAGCAACCGCATTTCTTGGCG-3’
Site-directed mutagenesis
DAF-7 C942T Forward: 5’- CTGAGATCGGATACTGTTGCCATCCAACCGAG −3’
Reverse: 5’- CTCGGTTGGATGGCAACAGTATCCGATCTCAG −3’
DAF-7 G914C Forward: 5’-CCTGAGATCGGATACTCCTGCCATCCA-3’
Reverse: 5’-TGGATGGCAGGAGTATCCGATCTCAGG-3’
RT-PCR
human Xbp1 Forward: 5’-AAACAGAGTAGCAGCTCAGACTGC-3’
Reverse: 5’-TCCTTCTGGGTAGACCTCTGGGAG-3’
C. elegans xbp Forward: 5’-CGTCGTCTACGAAGAAGAAGTCGTC-3’
Reverse: 5’-GATGATAGTTAGATACATATCCACACTG-3’
qPCR primers
Rpl19 Forward: 5’-AAAACAAGCGGATTCTCATGGA-3’
Reverse: 5’-TGCGTGCTTCCTTGGTCTTAG-3’
Blos1 Forward: 5’-CAAGGAGCTGCAGGAGAAGA-3’
Reverse: 5’-GCCTGGTTGAAGTTCTCCAC-3’
mCherry Forward: 5’-CCCGCCGACATCCCCGACTA-3’
Reverse: 5’-GGGTCACGGTCACCACGCC-3’
Gapdh Forward: 5’-CTGGGCTACACTGAGCAGG-3’
Reverse: 5’-AAGTGGTCGTTGAGGGCAATG-3’
C.elegans actin Forward: 5’-ATCACCGCTCTTGCCCCATC-3’
Reverse: 5’-GGCCGGACTCGTCGTATTCTTG-3’
daf-7 Forward: 5’-CGCTACAAAGGGATCCGAAC-3’
Reverse: 5’-CCCGTCGAGCATTGCCTTG-3’
ama-1 Forward: 5’-GATCTACGATCTGTGCAAAGC-3’
Reverse: 5’-CGAGTACTCGTTCGGCGGT-3’
acs-20 Forward: 5’-TCATAGAGTTGGAGCAAGACTTG-3’
Reverse: 5’-CTGAAGGAGCATCCAT GAT ACC-3’
ins-1 Forward: 5’-AACCGCTTTCAAACGTTCCG-3’
Reverse: 5’-CGTCCTGATTGCAGCAGAATG-3’