Summary of the docking results between 11+ and the different DNA structures, including the number of minor (minG) and major (MajG) grooves and other conformations and the lowest (and average) binding energy of the different conformations.
| PDB structure | N minG (%) | ΔGminG (kcal mol−1) | N MajG (%) | ΔGMajG (kcal mol−1) | Other | N other (%) | ΔGother (kcal mol−1) |
|---|---|---|---|---|---|---|---|
| 1BNA (native) | 59 | −5.62 (−4.65) | 41 | −5.38 (−4.77) | 0 | — | — |
| 5T4W (minor groove) | 79 | −6.41 (−5.39) | 21 | −5.68 (−5.12) | 0 | — | — |
| 1G3X (intercalator) | 23 | −8.89 (−8.23) | 0 | — | Int. + minG | 76 | −8.95 (−8.63) |
| Int. + MajG | 1 | −6.42 |