Table 1. Predicted Number of gRNA That Could be Used for Genetic and Genetic Interaction Screensa.
# of
good probes |
# of
gRNA |
|||||
---|---|---|---|---|---|---|
experimental setup | #laser | noise | one barcode | two barcodes | genetic screen | genetic interaction screen |
Cytek Northern Lights | 3 | high | 337 ± 3 | 113 ± 5 | 56 737 ± 1001 | 1565 ± 146 |
3 | low | 634 ± 5 | 230 ± 11 | 200 897 ± 3149 | 6544 ± 610 | |
2 | high | 292 ± 8 | 92 ± 5 | 42 458 ± 2445 | 1024 ± 101 | |
2 | low | 550 ± 25 | 175 ± 12 | 151 970 ± 14 008 | 3805 ± 528 | |
Cytek Aurora | 5 | high | 666 ± 15 | 294 ± 7 | 221 893 ± 10 020 | 10 694 ± 510 |
5 | low | 894 ± 3 | 708 ± 12 | 399 477 ± 2596 | 62 397 ± 2046 | |
4 | high | 580 ± 9 | 252 ± 10 | 167 983 ± 4916 | 7860 ± 654 | |
4 | low | 879 ± 2 | 590 ± 11 | 385 885 ± 1755 | 43 294 ± 1535 |
Results for the number of good probes that can be used to form barcodes and pairs of barcodes are shown for each experimental setup (the flow cytometer used), the number of lasers used, and the noise level (either low or high). Given the number of good probes, the number of potential gRNA for genetic and genetic interaction screens is calculated, as shown in Figure 1E. Results for the Cytek Northern Lights flow cytometer are highlighted in blue, and the results for the Aurora flow cytometer are highlighted in yellow. Uncertainty is the standard deviation from triplicate simulation experiments.