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. 2023 Jul 18;12(8):2290–2300. doi: 10.1021/acssynbio.2c00627

Table 1. Predicted Number of gRNA That Could be Used for Genetic and Genetic Interaction Screensa.

      # of good probes
# of gRNA
experimental setup #laser noise one barcode two barcodes genetic screen genetic interaction screen
Cytek Northern Lights 3 high 337 ± 3 113 ± 5 56 737 ± 1001 1565 ± 146
  3 low 634 ± 5 230 ± 11 200 897 ± 3149 6544 ± 610
  2 high 292 ± 8 92 ± 5 42 458 ± 2445 1024 ± 101
  2 low 550 ± 25 175 ± 12 151 970 ± 14 008 3805 ± 528
Cytek Aurora 5 high 666 ± 15 294 ± 7 221 893 ± 10 020 10 694 ± 510
  5 low 894 ± 3 708 ± 12 399 477 ± 2596 62 397 ± 2046
  4 high 580 ± 9 252 ± 10 167 983 ± 4916 7860 ± 654
  4 low 879 ± 2 590 ± 11 385 885 ± 1755 43 294 ± 1535
a

Results for the number of good probes that can be used to form barcodes and pairs of barcodes are shown for each experimental setup (the flow cytometer used), the number of lasers used, and the noise level (either low or high). Given the number of good probes, the number of potential gRNA for genetic and genetic interaction screens is calculated, as shown in Figure 1E. Results for the Cytek Northern Lights flow cytometer are highlighted in blue, and the results for the Aurora flow cytometer are highlighted in yellow. Uncertainty is the standard deviation from triplicate simulation experiments.