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. 2023 Aug 10;4(8):707–720. doi: 10.1038/s43016-023-00814-w

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — a, Pie chart showing the proportion of ARGs (out of the 195 found) associated with one or multiple MGEs. b, Undirected network graph showing potentially mobile ARGs (small orange circles) associated with different sample sources (large green circles). The edges in the graph link the potentially mobile ARGs to the sources in which they were found. c, Number of potentially mobile ARGs per sample per source. Each circle represents a single sample, with circles coloured by farm. d, Venn diagram showing that 145 (out of 661) potentially mobile ARGs were found to be present in both chicken and environmental samples from the same farm, and 182 potentially mobile ARGs contained clinically relevant ARGs. An overlap of 46 clinically relevant³⁰ potentially mobile ARGs was found in chicken and environmental sources obtained from the same farm. Note that in this analysis, samples from the same source collected at t₁ (week 3) and t₂ (week 6) were aggregated together, leading to a total of seven sources considered for each farm.