Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2023 Aug 22;14:5098. doi: 10.1038/s41467-023-40726-8

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Fig. 1 — a Phylogenetic tree based on 16S rRNA gene sequences showing the relationship among the 24 SAR202 strains isolated in this study and closely related sequences retrieved from various databases, including GTDB (marked in purple), IMG (yellow), GenBank, and EzBioCloud. The four SAR202 strains selected for genome sequencing are marked in red. RAxML (v8.2.12) was used for tree building with GTRGAMMA model. Bootstrap supporting values (≥70%; from 100 resamplings) are indicated. Dehalococcoides mccarty was set as an outgroup. Bar, 0.1 substitutions per nucleotide position. b Phylogenomic tree of the SAR202 clade. The four genomes of SAR202 strains from this study (marked in red) and other MAGs and SAGs from previous studies were classified using GTDB-Tk. Species cluster-representative genomes of the GTDB taxa, into which the analyzed SAR202 genomes were classified, were included for tree building. Designation of the SAR202 subgroups following the classification scheme of a previous study¹² is indicated on the left side of the tree with color shadings. On the right side of the tree, taxonomic assignment of the genomes at the family and order levels according to the GTDB (release 202) is shown. The tree building was performed using RAxML (v8.2.12), with PROTGAMMAAUTO option, based on a concatenated alignment of core genes obtained by UBCG pipeline. Bootstrap supporting values (100 iterations) are indicated on the nodes. Bar, 0.1 substitution per amino acid position.