Table 4.
Identification of putative candidate genes for complete panicle exsertion using F2 MutMap population of CPE-110 × BPT 5204
| Gene | Chromosome | Position | Location in gene | Ref allele | Alt allele | SNP index | Gene function |
|---|---|---|---|---|---|---|---|
| LOC_Os08g40560 | 8 | 25681951 | Intron | G | A | 1.0 | ZOS8-11-C2H2 zinc finger protein, expressed |
| 25682026 | Exon | G | A | 1.0 | |||
| LOC_Os08g40570 | 8 | 25683828 | Promoter | G | A | 1.0 | Pyridoxamine 5′-phosphate oxidase family protein, putative, expressed |
| 25683858 | Promoter | C | T | 1.0 | |||
| 25683907 | Promoter | C | T | 1.0 | |||
| LOC_Os08g40610 | 8 | 25702666 | 3′ UTR | C | T | 1.0 | 30S ribosomal protein S16, putative, expressed |
| LOC_Os08g40615 | 8 | 25708269 | 3′ UTR | G | A | 1.0 | Expressed protein |
| LOC_Os08g40640 | 8 | 25723394 | Intron | C | T | 1.0 | Retrotransposon protein, putative, Ty1-copia subclass, expressed |
| 25725623 | Exon | C | T | 1.0 | |||
| LOC_Os08g40660 | 8 | 25748406 | Intron | G | A | 1.0 | Retrotransposon protein, putative, unclassified, expressed |
| 25748564 | Exon | G | A | 1.0 | |||
| LOC_Os11g34370 | 11 | 20147154 | Intron | C | T | 1.0 | Phospholipase, patatin family, putative, expressed |
| 20147420 | Intron | G | A | 1.0 | |||
| 20147484 | Exon | C | T | 1.0 | |||
| 20147595 | Exon | C | T | 1.0 | |||
| 20147655 | Exon | G | A | 1.0 | |||
| 20147736 | Exon | C | T | 1.0 | |||
| 20147770 | Exon | G | A | 1.0 | |||
| 20147800 | Exon | C | T | 1.0 | |||
| 20147929 | 3′ UTR | G | A | 1.0 | |||
| LOC_Os11g34460 | 11 | 20182992 | Exon | G | A | 1.0 | OsFBO10-F-box and other domain containing protein, expressed |
| 20183408 | Exon | C | T | 1.0 | |||
| 20186295 | Intron | C | T | 1.0 | |||
| 20186389 | Intron | G | A | 1.0 | |||
| 20186415 | Intron | C | T | 1.0 |