Table 7.
List of candidate genes identified through RNA-seq for complete panicle exsertion
| SN | RAP gene ID | MSU gene ID | Description |
|---|---|---|---|
| 1 | Os11g0189600 | LOC_Os11g08569 | 2,3-Oxidosqualene cyclase, triterpene synthase, parkeol synthase |
| 2 | Os11g0311100 | None | Similar to pantothenate kinase family protein |
| 3 | Os07g0454200 | LOC_Os07g27120 | Similar to hydroxyproline-rich glycoprotein gas29p precursor |
| 4 | Os02g0522100 | LOC_Os02g32230 | Similar to cDNA clone:J013126H19, full insert sequence |
| 5 | Os07g0450000 | LOC_Os07g26740 | Similar to 60S ribosomal protein L44 |
| 6 | Os07g0472200 | LOC_Os07g28910 | Similar to zinc-finger protein Lsd1 |
| 7 | Os04g0511200 | LOC_Os04g43200 | EFA27 for EF hand, abscisic acid, 27kD |
| 8 | Os02g0541500 | LOC_Os02g33720 | Similar to predicted protein |
| 9 | Os07g0663800 | LOC_Os07g46852 | Similar to oxidoreductase, short chain dehydrogenase/reductase family protein, expressed |
| 10 | Os01g0124200 | LOC_Os01g03340 | Similar to Bowman-Birk trypsin inhibitor |
| 11 | Os01g0603800 | LOC_Os01g41930 | Similar to Triticum sp. (pAWJL3) leucine rich repeat region mRNA (fragment) |
| 12 | Os11g0286800 | LOC_Os11g18366 | Squalene cyclase domain containing protein |
| 13 | Os03g0689400 | LOC_Os03g48320 | Similar to NB-ARC domain containing protein, expressed |
| 14 | Os03g0654700 | LOC_Os03g45210 | Protein of unknown function DUF1637 family protein |
| 15 | Os10g0468500 | LOC_Os10g33040 | Serine/threonine protein kinase-related domain containing protein |
| 16 | Os01g0778900 | None | Similar to serine-rich protein-related |
| 17 | Os10g0446800 | LOC_Os10g30970 | Similar to predicted protein |
| 18 | Os07g0501700 | LOC_Os07g31830 | C2 calcium-dependent membrane targeting domain containing protein |
| 19 | Os09g0466400 | LOC_Os09g29130 | Zinc finger homeodomain (ZF-HD) class homeobox transcription factor, rice morphogenesis, modulation of leaf rolling |
| 20 | Os02g0137700 | LOC_Os02g04510 | NAD(P)-binding domain containing protein |
| 21 | Os04g0578600 | LOC_Os04g48930 | Similar to H0404F02.15 protein |
| 22 | Os07g0249800 | LOC_Os07g14600 | Similar to IAA-amino acid hydrolase ILR1-like 8 |
| 23 | Os03g0817100 | LOC_Os03g60250 | Uncharacterised protein family UPF0497, trans-membrane plant domain containing protein |
| 24 | Os02g0136800 | LOC_Os02g04420 | Protein of unknown function DUF1677, Oryza sativa family protein |
| 25 | Os11g0492300 | LOC_Os11g29990 | Similar to NB-ARC domain containing protein |
| 26 | Os01g0764800 | LOC_Os01g55940 | Indole-3-acetic acid (IAA)-amido synthetase, disease resistance, abiotic stress tolerance |
| 27 | Os03g0111300 | LOC_Os03g02050 | Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid transfer protein) |
| 28 | Os04g0531750 | LOC_Os04g44924 | Similar to OSIGBa0125M19.13 protein |
| 29 | Os01g0870400 | LOC_Os01g65010 | Similar to S-domain class receptor-like kinase3 |
| 30 | Os11g0485200 | LOC_Os11g29490 | ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein |
| 31 | Os09g0558100 | LOC_Os09g38560 | Similar to low-temperature induced protein lt101.2 |
| 32 | Os07g0228400 | LOC_Os07g12560 | Cyclin-like F-box domain containing protein |
| 33 | Os02g0147200 | LOC_Os02g05400 | Similar to cDNA clone:J013125B21, full insert sequence |
| 34 | Os10g0469600 | LOC_Os10g33130 | Similar to leucine-rich repeat family protein, expressed |
| 35 | Os05g0177500 | LOC_Os05g08480 | UDP-glucuronosyl/UDP-glucosyltransferase family protein |
| 36 | Os11g0444000 | LOC_Os11g25720 | Similar to UDP-glucosyltransferase BX8 |
| 37 | Os07g0689600 | LOC_Os07g48980 | Nicotianamine synthase 3 (EC 2.5.1.43) (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 3 |
| 38 | Os03g0342100 | LOC_Os03g22230 | Pollen Ole e 1 allergen/extensin domain containing protein |
| 39 | Os03g0197900 | LOC_Os03g10150 | Protein of unknown function DUF623, plant domain containing protein |
| 40 | Os07g0235700 | LOC_Os07g13160 | Similar to cDNA clone:J023006M12, full insert sequence |
| 41 | Os07g0477250 | LOC_Os07g29440 | Similar to S-adenosylmethionine synthetase 2 |
| 42 | Os07g0199350 | None | Similar to HAT family dimerisation domain-containing protein |
| 43 | Os07g0561800 | LOC_Os07g37454 | Similar to carbohydrate transporter/sugar porter |
| 44 | Os10g0100700 | LOC_Os10g01080 | Vitamin B6 biosynthesis protein family protein |