Table 2.
Assembly metrics comparing previous Eublepharis macularius reference genome (Xiong et al. 2016) to MPM_Emac_v1.0 reference assembly.
| Metric | Xiong et al. 2016 | MPM_Emac_v.1.0 |
|---|---|---|
| Contig N50 (bp)* | 20,426 | 80,105,973 |
| Contig L50* | 27,671 | 9 |
| Scaffold N50 (bp) | 663,762 | 145,573,841 |
| Scaffold L50 | 796 | 6 |
| Repeat content % | 42.1% | 48.0% |
| GC content % | 43.6% | 44.1% |
| Total scaffolds | 206,349 | 75 |
| Genome Size (bp)* | 1,981,651,937 | 2,237,374,058 |
| BUSCO Sauropsida (Genome) | C:93.4%[S:91.4%,D:2.0%],F:2.0%,M:4.6%,n:7480 | C:95.1%[S:93.0%,D:2.1%],F:0.9%,M:4.0%,n:7480 |
| BUSCO Sauropsida (Annotation) | C:90.6%[S:88.7%,D:1.9%],F:3.2%,M:6.2%,n:7480 | C:89.3%[S:87.6%,D:1.7%],F:3.6%,M:7.1%,n:7480 |
| BUSCO CVG (Genome) | C:96.6%[S:95.7%,D:0.9%],F:2.1%,M:1.3%,n:233 | C:99.2%[S:97.9%,D:1.3%],F:0.9%,M:0.1%,n:233 |
BUSCO scores abbreviated as follows: C = complete, S = complete single copy, D = complete multi-copy, F = fragmented, M = missing.
*Missing data not included in calculation.