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Recall versus precision on synthetic data sets with SNP-only (left), INS-only (middle), and DEL-only mutations (right). Each data set comprised 60 mutated (a) M. tuberculosis, (b) K. pneumoniae, and (c) S. aureus reference genomes. Mutations were introduced at a density of 1 for every 200 bases. Synthetic reads were generated at 50× average read depth.
