TABLE 3.
Top 50 taxa detected from April 2018 to September 2021
| Taxon namea | No. detected | Median (MPM) | IQR (MPM) |
|---|---|---|---|
| Bacteria | |||
| Acinetobacter haemolyticus | 199 | 142.97 | 192.68 |
| Bacteroides fragilis | 217 | 264.74 | 1,046.15 |
| Bacteroides ovatus | 133 | 141.43 | 476.14 |
| Bacteroides thetaiotaomicron | 146 | 221.79 | 742.60 |
| Bacteroides vulgatus | 392 | 153.01 | 413.32 |
| Enterobacter cloacae complex | 343 | 821.34 | 6,742.30 |
| Enterococcus faecalis | 582 | 617.90 | 3,285.15 |
| Enterococcus faecium | 510 | 687.63 | 3,958.33 |
| Escherichia coli | 1088 | 684.92 | 3,623.17 |
| Fusobacterium nucleatum | 299 | 460.25 | 1,922.08 |
| Haemophilus influenzae | 288 | 157.09 | 425.59 |
| Haemophilus parainfluenzae | 178 | 284.92 | 1,121.19 |
| Helicobacter pylori | 207 | 217.44 | 601.83 |
| Klebsiella pneumoniae | 501 | 910.19 | 5,889.84 |
| Lactobacillus fermentum | 165 | 256.13 | 1,058.08 |
| Lactobacillus rhamnosus | 281 | 344.33 | 1,250.14 |
| Prevotella melaninogenica | 509 | 208.52 | 545.66 |
| Prevotella oris | 170 | 517.78 | 2,094.07 |
| Pseudomonas aeruginosa | 817 | 1,005.18 | 6,874.18 |
| Rothia dentocariosa | 110 | 117.02 | 256.72 |
| Rothia mucilaginosa | 454 | 177.53 | 369.36 |
| Serratia marcescens | 99 | 492.72 | 2,956.54 |
| Staphylococcus aureus | 561 | 838.21 | 5,665.43 |
| Staphylococcus epidermidis | 716 | 579.58 | 2,689.68 |
| Staphylococcus haemolyticus | 92 | 1,137.08 | 5,450.01 |
| Stenotrophomonas maltophilia | 169 | 1,983.18 | 11,864.14 |
| Streptococcus intermedius | 100 | 354.95 | 1,048.47 |
| Streptococcus mitis | 356 | 226.15 | 897.48 |
| Streptococcus oralis | 140 | 235.54 | 730.42 |
| Streptococcus parasanguinis | 186 | 152.35 | 298.03 |
| Streptococcus pneumoniae | 214 | 975.48 | 11,933.10 |
| Streptococcus pyogenes | 95 | 1,064.08 | 9,773.54 |
| Streptococcus salivarius | 104 | 253.73 | 799.10 |
| Streptococcus thermophilus | 184 | 190.84 | 339.33 |
| Veillonella dispar | 162 | 140.88 | 269.85 |
| Veillonella parvula | 256 | 202.30 | 476.57 |
| Fungi | |||
| Aspergillus fumigatus | 186 | 300.10 | 723.60 |
| Candida albicans | 260 | 624.63 | 2,074.97 |
| Candida glabrata | 113 | 611.85 | 1,449.20 |
| Candida tropicalis | 103 | 784.49 | 3,997.85 |
| Pneumocystis jiroveci | 258 | 2,452.78 | 18,084.89 |
| Viruses | |||
| BK polyomavirus | 354 | 472.38 | 2,677.18 |
| Cytomegalovirus | 1275 | 633.93 | 3,889.67 |
| Epstein-Barr virus | 902 | 272.34 | 852.32 |
| Herpes simplex virus type 1 | 479 | 754.78 | 3,208.06 |
| Human herpesvirus 6B | 468 | 518.74 | 3,268.72 |
| Human herpesvirus 7 | 98 | 82.74 | 342.37 |
| Human adenovirus B | 100 | 3,184.75 | 69,714.71 |
| Human adenovirus C | 171 | 573.87 | 10,160.48 |
| Torque teno virus | 135 | 484.19 | 1,935.97 |
a
Reported taxa reflect those names used in the clinical reportable range of microbes at the time that the tests were performed.