Skip to main content
. 2023 Aug 24;5(3):lqad076. doi: 10.1093/nargab/lqad076

Figure 7.

Figure 7.

Recombination occurs between satellites and phages. (A) Examples of recombination between ICP1 T5orf172 HEGs and PLE 7 capR. Percent nucleotide identity between the sequences is shown by the shaded parallelograms below the gene graph. T5 = T5orf172 domain. (B) A pairwise percent nucleotide identity matrix between the ICP1 T5orf172 HEG capR encoding domain and the PLE7 capR domain. The two repeat capR encoding domains observed in primary gp174 allele are represented by gp174-r1 and gp174-r2. The ICP1 gp174* allele contains in-frame deletion, resulting in a single capR-like domain. (C) Recombination between ICP1 T5orf172 HEG gp5 and non-O1 V. cholerae PLE-encoded repA. Percent nucleotide identity is shaded between the gp5 RepA-N domain and the putative non-O1 PLE repA gene. The protein accession number for the RepA protein is listed to the left of the sequence. (D) A nucleotide alignment revealing the homology highlighted in the diagram in (C). Asterisks indicate identical basepairs between the sequences.