Table 2.

Prioritized six eQTL SNPs for PCCB

Source	References	Best GWAS SNP	LD eSNP	LD (r2)	Ref/Alt	Chromatin states (Core 15-state model)	PsychENCODE ATAC-seq Peak
MR-JTI	Wu et al., Mol. Neurobiol.14	–	–	–	–	–	–
TWAS	Hall et al., Hum. Mol. Genet.9	rs7432375	rs6791142	0.81	T/C	7_Enh	YES
			rs35874192	0.62	G/C	1_TssA	YES
			rs900818	0.63	C/T	1_TssA, 2_TssAFlnk	YES
	Huckins et al., Nat. Genet.11	–	–	–	–	–	–
	Gusev et al., Nat. Genet.8	rs7432375	rs7616204	0.64	C/T	7_Enh	YES
	Gandal et al., Science10	rs7427564	rs6791142	0.73	T/C	7_Enh	YES
SMR	Gandal et al., Science10	rs527888	rs570621	0.95	A/G	7_Enh	YES
			rs7349597	0.69	C/T	1_TssA, 2_TssAFlnk, 7_Enh	YES
	Li et al., Nat. Genet.12	rs66691851	rs7349597	0.6	C/T	1_TssA, 2_TssAFlnk, 7_Enh	YES
			rs570621	0.81	A/G	7_Enh	YES
			rs6791142	0.6	T/C	7_Enh	YES

1_TssA, Active transcription start site (TSS); 2_TssAFlnk, Flanking active TSS; 7_Enh, Enhancer; Ref/Alt, Reference /Alternative allele.