| AES |
Artificial Environmental Settings |
| GRN |
Gene Regulatory Network |
| ODE |
Ordinary Differential Equation |
| MLP |
Multi-Layer Perceptron |
| RNN |
Recurrent Neural Network |
| CNN |
Convolutional Neural Network |
| MSE |
Mean-Squared Error |
| MAE |
Mean Absolute Error |
| n |
Number of genes |
| b |
Number of observations |
| m |
Number of steps considered in the state matrix |
| k |
Number of experiments |
|
A generic agent related to the i-th gene |
|
Agent function |
|
State of the environment |
|
State matrix of the environment |
|
Environment reliability based on Pearson correlation |
|
Environment reliability based on cosine similarity |
|
Environment error based on MSE |
|
Environment error based on MAE |
|
Perturbation function |
|
Duration of a perturbation |
|
Perturbation instability interval |
|
Maximum gene expression level observed for the i-th gene in the dataset |