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. 2023 Aug 15;25(8):1214. doi: 10.3390/e25081214
AES Artificial Environmental Settings
GRN Gene Regulatory Network
ODE Ordinary Differential Equation
MLP Multi-Layer Perceptron
RNN Recurrent Neural Network
CNN Convolutional Neural Network
MSE Mean-Squared Error
MAE Mean Absolute Error
n Number of genes
b Number of observations
m Number of steps considered in the state matrix
k Number of experiments
Ai A generic agent related to the i-th gene
h· Agent function
x State of the environment
X State matrix of the environment
Rρ Environment reliability based on Pearson correlation
Rη Environment reliability based on cosine similarity
ErrMSE Environment error based on MSE
ErrMAE Environment error based on MAE
φ· Perturbation function
φd Duration of a perturbation
Δtr Perturbation instability interval
Gimax Maximum gene expression level observed for the i-th gene in the dataset