Skip to main content
. 2023 Aug 1;14(8):1569. doi: 10.3390/genes14081569

Table 1.

Primers and probes used to assess the transcription levels of pol genes of HERV-K, -W, and –H; env genes of Syncytin 1, Syncytin 2, and HERV-W; TRIM28 and SETDB1; and GAPDH.

Name Primer/
Probe
Sequence
HERV-H pol Forward 5′-TGGACTGTGCTGCCGCAA-3′
Reverse 5′-GAAGSTCATCAATATATTGAATAAGGTGAGA-3′
Probe 6FAM-5′-TTCAGGGACAGCCCTCGTTACTTCAGCCAAGCTC-3′-TAMRA
HERV-K pol Forward 5′-CCACTGTAGAGCCTCCTAAACCC-3′
Reverse 5′-TTGGTAGCGGCCACTGATTT-3′
Probe 6FAM-5′-CCCACACCGGTTTTTCTGTTTTCCAAGTTAA-3′-TAMRA
HERV-W pol Forward 5′-ACMTGGAYKRTYTTRCCCCAA-3′
Reverse 5′-GTAAATCATCCACMTAYYGAAGGAYMA-3′
Probe 6FAM-5′-TYAGGGATAGCCCYCATCTRTTTGGYCAGGCA-3′-TAMRA
Syncytin 1 env Forward 5′-ACTTTGTCTCTTCCAGAATCG-3′
Reverse 5′-GCGGTAGATCTTAGTCTTGG-3′
Probe 6FAM-5′-TGCATCTTGGGCTCCAT-3′-TAMRA
Syncytin 2 env Forward 5′-GCCTGCAAATAGTCTTCTTT-3′
Reverse 5′-ATAGGGGCTATTCCCATTAG-3′
Probe 6FAM- 5′-TGATATCCGCCAGAAACCTCCC-3′-TAMRA
HERV-W env Forward 5′-CTTCCAGAATTGAAGCTGTAAAGC-3′
Reverse 5′-GGGTTGTGCAGTTGAGATTTCC-3′
Probe 6FAM-5′-TTCTTCAAATGGAGCCCCAGATGCAG-3′-TAMRA
TRIM28 Forward 5′-GCCTCTGTGTGAGACCTGTGTAGA-3′
Reverse 5′-CCAGTAGAGCGCACAGTATGGT-3′
Probe 6FAM-5′-CGCACCAGCGGGTGAAGTACACC-3′-TAMRA
SETDB1 Forward 5′-GCCGTGACTTCATAGAGGAGTATGT-3′
Reverse 5′-GCTGGCCACTCTTGAGCAGTA-3′
Probe 6FAM-5′-TGCCTACCCCAACCGCCCCAT-3′-TAMRA
GAPDH Forward 5′-CGAGATCCCTCCAAAATCAA-3′
Reverse 5′-TTCACACCCATGACGAACAT-3′
Probe 6FAM-5′-TCCAACGCAAAGCAATACATGAAC-3′-TAMRA