Table 1.

Genomic sequencing data across multiple platforms for various Cryptosporidium species.

Species	Genomes ID	Platform	Genome Size (Mbp)	# of Contigs	# of Reads	Contig N50 (bp)	Average Coverage
C. hominis	TU502 237895	Sanger Dideoxy Sequencing	8.70	1422	-	48,000	12
	TU502 2012	Illumina MiSeq	9.10	119	1,810,060	238,509	96
	30976	Illumina Genome Analyzer IIx 100 bp paired-end	9.05	53	35,360,353	470,636	511
	37999	Illumina Genome Analyzer IIx 100 bp paired-end	9.05	78	16,569,87	406,678	367.4
	33537	454 GS-FLX Titanium	9.60	1464	1,157,140	27,749	31
	30974	454 GS-FLX Titanium	8.84	443	1,048,412	78,110	43
	SWEH2	Ion Torrent	8.81	1629	1,791,829	9465	35.2
	SWEH5	Ion Torrent	8.82	1342	2,058,197	14,514	42.4
	UdeA01	Illumina MiSeq	9.04	8	1,080,44	1,103,974	53.4
	UKH1	Illumina MiSeq	9.14	156	3,798,205	179,408	197.3
	UKH3	Illumina MiSeq	9.07	179	1,238,762	167,737	35.8
	UKH4	Illumina HiSeq	9.39	2164	11,895,367	48,766	321.5
	UKH5	Illumina HiSeq	9.06	526	12,649,912	81,885	362.2
C. parvum	Iowa II 5807	Sanger Dideoxy Sequencing	9.10	18	-	1,014,526	13
	UKP1	Illumina HiSeq	8.88	14	26,000,000	1,092,230	600
	31727	Illumina Genome Analyzer IIx 100 bp paired-end	9.08	337	13,074,496	76,396	116.0
	34902	Illumina Genome Analyzer IIx 100 bp paired-end	9.11	1076	18,907,631	21,594	168.7
	35090	Illumina Genome Analyzer IIx 100 bp paired-end	9.04	3256	14,188,762	4248	3.256
C. baileyi	TAMU-09Q1	gDNA Illumina library fragment size (bp) 654	8.43	145	6,240,960	203,018	70.06
C. muris	5808	4.5× Sanger and 10× 454	9.25	97		520,347	10
C. chipmunk genotype I	1280935	Illumina Genome Analyzer IIx 100 bp paired-end	9.05	50	9,509,783	117,886	200
C. bovis	310047	Illumina HiSeq 250 bp paired-end	9.11	59	7,080,000	444,382	196
C. ryanae	515981	Illumina HiSeq 250 bp paired-end	9.06	100	5,130,000	231,122	142.5
C. meleagridis	UKMEL1	Illumina MiSeq	8.9	57	11,431,022	322,908	110.4