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. 2023 Jul 27;14(8):1545. doi: 10.3390/genes14081545

Table 1.

Data for Wolbachia genetic sequences used for the purpose (Purpose) of in silico extraction of sequence from genomes for primer redesign (PR) or Wolbachia allele strain typing and/or phylogenetic analysis (A/P). Shown are Wolbachia host species names, Wolbachia strain abbreviations, host collection locations or laboratory sources if known, National Center for Biotechnology Information (NCBI) accessions, genome references, and Wolbachia supergroup designations.

Wolbachia Host Wolbachia Strain Host Collect Location Genome Accession Citation Supergroup Purpose
Drosophila recens wRec Rochester, New York, USA GCF_000742435.1 [37] A PR
D. melanogaster wMel Stock Center D. melanogaster strain yw67c23 GCF_000008025.1 [35] A PR, A/P
D. simulans wNo Noumea, New Caledonia GCF_000376585.1 [38] B PR, A/P
D. simulans wHa Hawai’i, USA GCF_000376605.1 [38] A A/P
D. ananassae wAna Tucson Strain Center [strain 14024-0371.13] GCF_000167475.1 [39] A PR
D. suzukii wSuzi, strain valsugana Trentino Alto Adige, Italy GCF_000333795.1 [40] A PR, A/P
Culex quinquefasciatus wPip strain Pel Sri Lanka AM999887.1 [41] B A/P
C. quinquefasciatus wPip strain JHB Johannesburg, Africa ABZA0100000 [42] B A/P
Aedes albopictus wAlbA Unknown 1 [34] A A/P
Brugia malayi wBm TRS Lab colony (Athens, GA, USA) NC_006833.1 [43] D A/P
Cimex lectularius strain JESC wCle Japan AP013028.1 [44] F A/P

1 “isolate 12”, typed using MLST by Baldo et al. [34], NCBI accessions DQ842268.1, DQ842342.1, DQ842379.1, DQ842305.1.