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. 2023 Aug 15;13(8):1747. doi: 10.3390/life13081747

Figure 1.

Figure 1

UpSet plots generated to highlight the formation of different CTS groups in response to CABMV and CPSMV mechanical inoculation. Each horizontal column represents an original dataset, and the bar charts at the top indicate the resultant dataset size after comparison with the others. Each line represents a potential intersection: filled-in cells connected by lines indicate which datasets are part of an intersection. Red and blue bars indicate up-regulated and down-regulated CTS groups, respectively. (A) Set of differentially expressed transcripts for the one hour post-inoculation (hpi) treatments and their resulting CTS groups. (B) Set of differentially expressed transcripts for the 16 hpi treatments and their resulting CTS groups. (C) The comparison of CTS groups of different temporal scales. Legend: CTS (Conserved Transcriptional Signatures); CPSMV1-UR group (up-regulated transcripts in the CPSMV mechanical inoculation assay at one hour post-inoculation); CPSMV16-UR group (up-regulated transcripts in the CPSMV mechanical inoculation assay at 16 hpi); CPSMV1-DR group (down-regulated transcripts in the CPSMV mechanical inoculation assay at one hpi); CPSMV16-DR group (down-regulated transcripts in the CPSMV mechanical inoculation assay at 16 hpi); CABMV1-UR group (up-regulated transcripts in the CABMV mechanical inoculation assay at one hpi); CABMV16-UR group (up-regulated transcripts in the CABMV mechanical inoculation assay at 16 hpi); CABMV1-DR group (down-regulated transcripts in the CABMV mechanical inoculation assay at one hpi); CABMV16-DR group (down-regulated transcripts in the CABMV mechanical inoculation assay at 16 hpi); CTS-1UR group (up-regulated transcripts in response to CABMV and CPSMV mechanical inoculations at one hpi treatments); CTS-1DR group (down-regulated transcripts in response to CABMV and CPSMV mechanical inoculations, at one hpi treatments); CTS-16UR group (up-regulated transcripts in response to CABMV and CPSMV mechanical inoculations, at 16 hpi treatments); CTS-16DR group (down-regulated transcripts in response to CABMV and CPSMV mechanical inoculations, at 16 hpi treatments).