Table 3.
In silico predictions by AntiSMASH of bacteriocin/RiPP-like PBGCs and other secondary metabolite gene clusters. Where no core peptide or no similar cluster was found, the result is given as “none.” ×2 = two clusters found; % sim = similarity; nd = no data.
| Strain | AntiSMASH | |||
|---|---|---|---|---|
| Bacteriocin Prediction | Similar Cluster | % Sim. | Other PBGCs Present | |
| Arthrobacter sp. APC 3897 | RiPP-like | head-to-tail cyclized peptide | 71 | betalactone (×2), siderophore, T3PKS, terpene |
| Curtobacterium sp. APC 4022 | RiPP-like (×2) | lactococcin_972 (×2) | nd | betalactone, NRPS-like, siderophore, T3PKS (×2), terpene |
| Kocuria sp. APC 4018 | RiPP-like | linocin_M18 | nd | betalactone, NRPS-like, siderophore, T3PKS, terpene |
| Microbacterium sp. APC 3898 | none | - | - | betalactone, NAPAA, T3PKS, terpene |
| Microbacterium sp. APC 3901 | none | - | - | NAPPA, T3PKS, betalactone, terpene |
| Micrococcus sp. APC 4021 | none | - | - | betalactone, ectoine, NRPS-like, siderophore, terpene |
| Planococcus sp. APC 3900 | lanthipeptide class II | cerecidin | 70 | terpene (×2) |
| Planococcus sp. APC 3906 | none | - | - | terpene (×2) |
| Planococcus sp. APC 4015 | lanthipeptide | cerecidin | 70 | terpene (×2) |
| Planococcus sp. APC 4016 | lanthipeptide class II | cerecidin | 70 | terpene (×2) |
| Pseudoalteromonas sp. APC 3213 | RiPP-like | burkholderic acid | 15 | siderophore |
| Pseudoalteromonas sp. APC 3215 | RiPP-like | none | - | siderophore |
| Pseudoalteromonas sp. APC 3218 | RiPP-like | none (DUF692-family protein) | nd | siderophore |
| Pseudoalteromonas sp. APC 3224 | RiPP-like (×2) | none (DUF692-family protein, ×2) | nd | NRPS, siderophore |
| Pseudoalteromonas sp. APC 3227 | RiPP-like | none | - | siderophore |
| Pseudoalteromonas sp. APC 3250 | RiPP-like | none | - | siderophore |
| Pseudoalteromonas sp. APC 3350 | RiPP-like | none (DUF692-family protein) | nd | betalactone, redox-cofactor, siderophore |
| Pseudoalteromonas sp. APC 3356 | RiPP-like | none | - | siderophore |
| Pseudoalteromonas sp. APC 3358 | RiPP-like | nucleocidin | 17 | arylpolyene |
| Pseudoalteromonas sp. APC 3426 | none | - | - | betalactone |
| Pseudoalteromonas sp. APC 3495 | RiPP-like | none (DUF692-family protein) | nd | siderophore |
| Pseudoalteromonas sp. APC 3691 | RiPP-like | none (DUF692-family protein) | nd | arylpolyene, betalactone |
| Pseudoalteromonas sp. APC 3694 | RiPP-like | none (DUF692-family protein) | nd | none |
| Pseudoalteromonas sp. APC 3893 | RiPP-like | none | - | arylpolyene, resorincol, NRPS (×2), PKS, T3PKS |
| Pseudoalteromonas sp. APC 3894 | RiPP-like | none (DUF692-family protein) | nd | siderophore |
| Pseudoalteromonas sp. APC 3895 | RiPP-like | none | - | siderophore |
| Pseudoalteromonas sp. APC 3896 | RiPP-like | none | - | siderophore |
| Pseudoalteromonas sp. APC 3907 | RiPP-like | none | - | siderophore, betalactone |
| Pseudoalteromonas sp. APC 4017 | RiPP-like | none | - | arylpolyene, resorcinol (×2), PKS, NRPS, T3PKS |
| Pseudoalteromonas sp. APC 4026 | RiPP-like | none (DUF692-family protein) | nd | siderophore |
| Psychrobacter sp. 5A.1 | RiPP-like | none (DUF692-family protein) | nd | betalactone, redox-cofactor, siderophore |
| Psychrobacter sp. APC 3279 | none | - | - | betalactone |
| Psychrobacter sp. APC 3281 | none | - | - | betalactone, redox-cofactor |
| Psychrobacter sp. APC 3355 | RiPP-like (×2) | none (DUF692-family protein, ×2) | nd | siderophore |
| Rhodococcus sp. APC 3903 | LAP | dissonitrile antibiotic SF2768 | 11 | butyrolactone, ectoine, NRPS (×15), NRPS-like (×3), terpene (×2), PKS-like, T1PKS (×2), |
| RiPP-like | branched-chain fatty acids | 75 | ||
| lanthipeptide class III | none | - | ||
| Winogradskyella sp. APC 3343 | none | - | - | NRPS, T1pks, T3PKS, Terpene (×2) |