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. 2023 Aug 2;3(1):vbad101. doi: 10.1093/bioadv/vbad101

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© The Author(s) 2023. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — The pipelines of PhaBOX. The input of PhaBOX is the FASTA file containing assembled contigs. Then, PhaMer (Shang et al. 2022) is applied for phage identification. Only the contigs predicted as phages will be used for lifestyle prediction (PhaTYP; Shang et al. 2023), taxonomic classification (PhaGCN; Shang et al. 2021), and host prediction (CHERRY; Shang and Sun 2022). Finally, we provided the predictions and visualization for users on the result page.