Table 3:
Performance comparisons on the BDB2020+ benchmark set in terms of root mean square error (RMSE) and Pearson correlation coefficient (R) for different models before and after retraining using LP-PDBBind.
| Model | RMSE (kcal/mol) | R | ||||
|---|---|---|---|---|---|---|
| original | retrained | difference | original | retrained | difference | |
| AutoDock Vina | 3.29 | 2.23 | −32% | 0.21 | 0.28 | +33% |
| IGN | 1.61 | 1.38 | −14% | 0.38 | 0.52 | +37% |
| RF-Score | 1.84 | 1.59 | −14% | 0.31 | 0.50 | +61% |
| DeepDTA | 1.99 | 2.15 | +8% | 0.17 | 0.06 | −65% |