Table III.
F1-scores of ProtoNER model. The results obtained according to each entity type of each dataset. the entity types with less than 10 instances and their performance have been highlighted in bold and underlined.
| Datasets | Labels | Instances of label | F1-score |
|---|---|---|---|
| N2C2 2018 | Drug | 12510 | 63.92 |
| Strength | 5519 | 83.45 | |
| Form | 5398 | 87.93 | |
| Frequency | 4062 | 63.57 | |
| Dosage | 3280 | 75.12 | |
| Route | 4672 | 85.72 | |
| Duration | 461 | 0.00 | |
| Reason | 2962 | 40.81 | |
| ADE | 692 | 24.24 | |
| I2B2 2014 | PATIENT | 903 | 61.81 |
| DOCTOR | 1986 | 63.37 | |
| USERNAME | 60 | 93.88 | |
| PROFESSION | 161 | 66.67 | |
| HOSPITAL | 945 | 55.03 | |
| ORGANIZATION | 88 | 19.99 | |
| STREET | 162 | 96.87 | |
| CITY | 293 | 69.99 | |
| STATE | 250 | 76.71 | |
| COUNTRY | 61 | 85.71 | |
| ZIP | 164 | 90.14 | |
| LOCATION-OTHER | 4 | 0.00 | |
| AGE | 874 | 79.99 | |
| DATE | 5087 | 69.31 | |
| PHONE | 175 | 81.97 | |
| FAX | 5 | 0.00 | |
| 2 | 0.00 | ||
| URL | 6 | 0.00 | |
| HEALTHPLAN | 1 | 0.00 | |
| MEDICALRECORD | 337 | 78.57 | |
| IDNUM | 78 | 54.05 | |
| DEVICE | 7 | 0.00 | |
| BIOID | 1 | 0.00 | |
| MIMIC III | CONDITION/SYMPTOM | 2365 | 40.01 |
| DRUG | 690 | 65.24 | |
| AMOUNT | 403 | 50.01 | |
| TIME | 326 | 40.63 | |
| MEASUREMENT | 665 | 49.85 | |
| LOCATION | 618 | 47.31 | |
| EVENT | 757 | 36.86 | |
| FREQUENCY | 62 | 0.00 | |
| ORGANIZATION | 114 | 28.62 | |
| DATE | 2 | 0.00 | |
| AGE | 44 | 95.25 | |
| GENDER | 36 | 99.98 | |
| BioNLP 2016 | GENE | 18258 | 27.87 |
| SMM4H 2021 | ADE | 1124 | 7.84 |