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. 2023 Aug 23;24:192. doi: 10.1186/s13059-023-03020-w
Predictive marker class Predictive accuracy > 0.5 Feature relation to target Feature importance Feature type Dep.- Feature Correlation direction Dep. Skewness
Genetic driver Any model Self Normalized feature importance > 0.05 Hotspot or missense mutation, fusion, copy number Negative (CN), Positive (Mut.) Negative
Expression addiction Model using self exp. feat Self Top feature of model RNAseq Negative
Synthetic lethal (paralog) Model using paralog as top feature Other (paralog) Top feature Any Any
CYCLOPS Model using self exp. feat Self Top feature on same chr. arm and self-feature has normalized feature importance > 0.05 Copy number OR RNAseq Positive cor. to top feature AND positive cor. to self CN Negative
Oncogene addiction Any model Self (oncogene from oncoKB.org) Top 10 of unbiased or related model Any Any Negative
Synthetic lethal (oncogene/TSG) Model using oncogene or TSG feature Other (oncogene or TSG from oncoKB.org) Normalized feature importance > 0.05 Any Any Negative