Predictive marker class |
Predictive accuracy > 0.5 |
Feature relation to target |
Feature importance |
Feature type |
Dep.- Feature Correlation direction |
Dep. Skewness |
Genetic driver |
Any model |
Self |
Normalized feature importance > 0.05 |
Hotspot or missense mutation, fusion, copy number |
Negative (CN), Positive (Mut.) |
Negative |
Expression addiction |
Model using self exp. feat |
Self |
Top feature of model |
RNAseq |
Negative |
|
Synthetic lethal (paralog) |
Model using paralog as top feature |
Other (paralog) |
Top feature |
Any |
Any |
|
CYCLOPS |
Model using self exp. feat |
Self |
Top feature on same chr. arm and self-feature has normalized feature importance > 0.05 |
Copy number OR RNAseq |
Positive cor. to top feature AND positive cor. to self CN |
Negative |
Oncogene addiction |
Any model |
Self (oncogene from oncoKB.org) |
Top 10 of unbiased or related model |
Any |
Any |
Negative |
Synthetic lethal (oncogene/TSG) |
Model using oncogene or TSG feature |
Other (oncogene or TSG from oncoKB.org) |
Normalized feature importance > 0.05 |
Any |
Any |
Negative |