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. 2023 Aug 30;14:789–806. doi: 10.18632/oncotarget.28490

Table 4. NeXT Dx cancer-related genes.

ABCB1 CAMTA1 CSF1R EWSR1 GATA1 LIG4 MUTYH PDGFA PTPN11 SDHA* TMPRSS2
ABL1 CBFB CSF3R EXO1 GATA2*† LRP1B MYC PDGFB PVRL4 SDHAF2* TNFRSF4
AKAP9 CBL CTAG2 EZH2 GEN1 MAGEA3 MYCL PDGFRA*† RAD21 SDHB*† TNFRSF8
AKT1 CCNA1 CTDNEP1 EZHIP GLI2 MAGEA4 MYCN PDGFRB RAD50*† SDHC*† TNFRSF10B
AKT2 CCNA2 CTLA4 FAM175A GNA11 MAML1 MYD88 PGR RAD51 SDHD*† TP53*†
AKT3 CCNB1 CTNNA1 FAN1 GNAQ MAP2K1 MYH11 PHF1 RAD51B SETBP1 TSC1*†
ALK*† CCNB2 CTNNA2 FANCA GNAS MAP2K2 MYOD1 PIK3CA*† RAD51C*† SETD2 TSC2*†
APC*† CCNB3 CTNNA3 FANCB GPNMB MAP2K4 NAB2 PIK3CB RAD51D*† SF3B1 TYRO3
APOBEC3B CCND1 CTNNB1 FANCC H3F3A MAP3K1 NBN PIK3CD RAD52 SHFM1 U2AF1
AR CCND2 CUX1 FANCD2 HDAC1 MAPK1 NCSTN PIK3CG RAD54B SHH USH2A
ARAF CCND3 DDR2 FANCE HDAC2 MAPK11 NF1*† PIK3R1 RAD54L SLX4 VEGFA
AREG CCNE1 DDX3X FANCF HEY1 MAPK3 NF2*† PIK3R2 RAF1 SMAD4*† VEGFB
ARID1A CCNE2 DEK FANCG HNF1A MAX* NFE2L2 PML RARA SMARCA4 VEGFC
ARID1B CD274 DKK1 FANCI HRAS MBTD1 NKX2-1 PMS1 RB1*† SMARCB1 VGLL2
ARID2 CD276 DLL3 FANCL HSP90AA1 MCL1 NOTCH1 PMS2*† RBBP8 SMC1A VHL*†
ASXL1 CD40 DLL4 FANCM IDH1 MCPH1 NOTCH2 POLD1* RBM15 SMC3 WEE1
ATM*† CDH1*† DNMT3A FBXW7 IDH2 MDC1 NOTCH3 POLD2 RECQL4 SMO WRN
ATR CDH3 DOT1L FCER2 IGF1R MDM2 NOTCH4 POLE*† RELA SRC WT1*†
ATRX CDK1 EED FGF2 IKBKE MDM4 NPAP1 POLQ RET*† SRSF2 WWTR1
AURKA CDK2 EGFR*† FGF4 IKZF1 MECOM NPM1 PPM1D RFC1 SS18 XPO1
AXL CDK4*† EIF1AX FGF19 IL2RA MEN1*† NR4A3 PPP2R1A RFC2 SSBP1 XRCC1
BAP1*† CDK6 EML4 FGFR1 JAG1 MERTK NRAS PPP2R2A RFC3 STAG2 XRCC2
BARD1* CDK9 EP300 FGFR2 JAK1 MET*† NRG1 PRAME RFC4 STAT3 XRCC3
BCL2 CDK12 EPCAM FGFR3 JAK2 MGAM NTRK1 PRKACA RFC5 STAT5B XRCC4
BCL6 CDKN1A EPHA2 FGFR4 JAK3 MKL1 NTRK2 PRKCA RHEB STAT6 XRCC5
BCOR CDKN1B*† ERBB2 FH*† KDM5C MLH1*† NTRK3 PRKCB RICTOR STK11*† XRCC6
BCORL1 CDKN2A*† ERBB3 FIGF KDM6A MLH3 NUP214 PRKCD ROS1 SUFU* YAP1
BCR CDKN2B ERBB4 FLCN*† KDR MLLT3 NUTM2A PRKCE RPA1 SULT1A1 YES1
BLM CDKN2C ERCC1 FLT1 KEAP1 MPL OTX2 PRKCG RPA2 SUZ12 YWHAE
BRAF CEBPA*† ERCC2 FLT3 KIT*† MRE11A*† PALB2*† PRKCI RPA3 SYK ZMYM3
BRCA1*† CHEK1 ERCC3 FLT4 KLB MS4A1 PARP1 PRKCQ RPA4 TEK ZRSR2
BRCA2*† CHEK2*† ERCC4 FOLR1 KMT2A MSH2*† PARP2 PRKCZ RPN1 TERT*†
BRD4 CIC ERCC5 FOXL2 KMT2C MSH3 PAX3 PRKDC RPTOR TET2
BRIP1*† CREBBP ERCC6 FOXO1 KMT2D MSH6*† PBRM1 PSCA RTEL1* TFE3
BTK CRKL ESR1 FRK KRAS MSLN PCNA PTCH1*† RUNX1*† TGFBR1
C11orf30 CRLF2 ESR2 FUS LAG3 MST1R PDCD1 PTEN*† RUNX1T1 TGFBR2
CALR CRTC1 ETV6*† FYN LIG3 MTOR PDCD1LG2 PTK2 RYR1 TMEM127*

*Refers genes that may be reported as pathogenic or likely pathogenic incidental germline variants. Refers 284 fusion genes.