TABLE 1.

Comparison of annotation features in S. aureus USA300 lineage

	S. aureus TCH1516	S. aureus LAC
Total sequence length (bp)	2,872,915	2,878,171
Total chromosome and plasmids	3, NC_010079.1 (chromosome) NC_012417.1 (plasmid 1) NC_010063.1 (plasmid 2)	2, CP035369.1 (chromosome) CP035370.1 (plasmid)
Gene (total)	2920	2892
CDS (total)	2841	2802
Genes/CDS (coding)	2763	2733
RNA
rRNAs (5S, 16S, 23S)	6, 5, 5	7, 6, 6
tRNAs	59	67
ncRNAs	4	4
Pseudo gene (total)	78	69